Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4530 136 1e-26 seq17252 107 6e-18 seq17418 86.0 2e-11 >seq4530 Length=13094 Score = 136 bits (150), Expect = 1e-26 Identities = 226/324 (70%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||| | ||||| |||||||||||||| ||||||| | || || || |||| | | Sbjct 12154 CTTTTTCTTCCAACTGCATCAATTTCGTCGATGAAAAGAATGCAGGGTGAGTTTTTACGC 12095 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || | || | || || || | | || ||| | |||||| ||||||| | |||| Sbjct 12094 GCCATCGAGAACATGTCCCTAACTCTTGCTGGTCCTACTCCAACAAACATTTCCAGAAAT 12035 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || || |||| || ||||||| |||||||| || || || ||| |||| || Sbjct 12034 TCCGAGCCGGAAACCGTGATGAATGGAACATTTGCCTCTCCAGCCGTTGCTTTCGCGAGG 11975 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCC 289259 || ||||| || |||||||| || ||| || | | |||||||| | ||| || ||| Sbjct 11974 AGGGTCTTTCCAGTTCCAGGGGGACCCGTCAAAATTGCACCCTTTGGAATTTTGGCGCCC 11915 Query 289260 AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTT 289319 || | ||| |||| | ||| | || ||||| | |||| ||| || ||| ||| Sbjct 11914 AG-ATCCTTGTATTGTTGGGGGTTTTTCAAAAAGTTCACAAACTCCATAATCTCAATTTT 11856 Query 289320 TGCCTCATCACATCCTGCTACATC 289343 ||||| ||||| || || ||||| Sbjct 11855 GGCCTCCTCACAACCAGCGACATC 11832 >seq17252 Length=32309 Score = 107 bits (118), Expect = 6e-18 Identities = 188/271 (69%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| |||||| | ||||||||| ||||| |||||| | || || ||||| || Sbjct 30362 TTCCATAGCCTTGATGAGACGACGCTGGATATATCCAGTTTCGGCAGTCTTGACAGCAGT 30421 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCC 302692 ||| || ||||| | ||||| |||||||| |||||||| | ||| || ||| || | Sbjct 30422 ATCGATAAGACCTTCGCGACCTCCCATAGCGTGGAAGAAGAACTCGGAAGG-CGTGAGAC 30480 Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAA 302752 | ||| | | || | || ||||| || || ||| || | ||| ||| ||| Sbjct 30481 CGGCAAGATACGAATTTTCGACGAATCCTTTCGACTCTGGTCCGTAGTCATCTTTGATAA 30540 Query 302753 AGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCT 302812 |||| || || || | | | ||| |||| ||||||||||| || |||||||| | Sbjct 30541 AGTGAGGAAGTGTTCGATGACGGAATCCGAATGGAATACGCTTTCCTTCGACGTTCTGTT 30600 Query 302813 GTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| | || | ||| | ||| || || || Sbjct 30601 GTCCGACACAAGCAATAACCTGTGAGATGTT 30631 >seq17418 Length=39954 Score = 86.0 bits (94), Expect = 2e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 133409 CACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468 |||| ||| | ||||| ||| ||| ||| | || || ||||| | ||||||||| Sbjct 948 CACACACTGCTTAACGCAATTTTCGAGTTTGAGTTCATCAAGAAGAAGGCCGACTGGGCT 889 Query 133469 ATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTA 133528 | ||||| ||||||| ||| ||||| | || | || || |||| Sbjct 888 CTCCGTTGGATTTCGGACAAGAAAGCGTCATTTGCCGAGAGACTTATCGCGTTCGCTGCT 829 Query 133529 GTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGT 133588 || || || || ||||| ||||| | ||| ||| ||||||||||||||||||||||| Sbjct 828 GTCGAAGGAATCTTTTTTAGTGGATCTTTCGCCTCCATTTTTTGGCTTAAAAAGCGTGGG 769 Query 133589 ATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGG 133630 | | || || || | |||||||||||| ||||| ||| Sbjct 768 CTCATGCCAGGGCTCACTCATTCTAACGAACTGATTTCTAGG 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471462755355329