Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq17868 150 2e-31 seq18085 116 3e-21 seq17886 100 3e-16 >seq17868 Length=20976 Score = 150 bits (166), Expect = 2e-31 Identities = 163/211 (77%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || | ||||| |||||| || Sbjct 6432 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACATTGGAAGTCGAAGCCTCC 6491 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| ||| ||||| || |||||||| |||||||| || || || || Sbjct 6492 GACACAATTGAGAACGTGAAAGCAAAA-ATTCAAGACAAGGAAGGAATCCCACCAGACCA 6550 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATA 24881 ||| | ||||||||||||| || |||||||| || | || ||| |||| || || | Sbjct 6551 GCAAAGACTGATCTTTGCCGGAAAGCAGCTGGAAGA-TGGACGCACATTGTCCGACTACA 6609 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 | |||||||||||||| ||||| |||||||| Sbjct 6610 ATATTCAAAAGGAATCCACACTTCACTTGGT 6640 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | ||||| || || || ||||| || || || ||| || Sbjct 6888 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAGGCCTCC 6947 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| || |||||||||||||| ||||| || || || ||| Sbjct 6948 GACACTATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAGGGAATCCCACCAGACCAA 7007 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||| ||||| || || |||| ||| | | | |||| || || ||| Sbjct 7008 CAAAGACTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCCTGTCGGACTACAAC 7067 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 ||||||||||| |||||||| || Sbjct 7068 ATTCAAAAGGAGTCGACACTCCA 7090 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || |||| || |||||||| || || || || ||||| || Sbjct 8123 ATGCAAATCTTCGTCAAGACTTTAACTGGAAAAACTATCACCCTTGAGGTCGAAGCATCC 8182 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| || ||||| || || ||||| Sbjct 8183 GACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 8242 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || ||||| |||||| | | | | || || || ||| Sbjct 8243 CAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAAC 8302 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || || ||| | ||| | || | || ||||| Sbjct 8303 ATCCAAAAAGAATCCACTCTTCACCTTGTGCTCCGTCTTCGTGGAGG 8349 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | ||||| ||||| || || ||||| || || ||| || Sbjct 5976 ATGCAAATTTTCGTCAAAACTTTGACCGGAAAAACGATCACCCTCGAGGTTGAGGCCTCC 6035 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||| |||||||| ||||| ||||| Sbjct 6036 GACACCATCGAAAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 6095 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| ||||| || ||||| |||||| | | | | || ||||||||| Sbjct 6096 CAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGATTATAAC 6155 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || ||| | ||| Sbjct 6156 ATCCAGAAGGAGTCAACTCTCCACCTTGTG 6185 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || ||| || Sbjct 6204 ATGCAGATCTTCGTGAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTTGAGGCCTCC 6263 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| |||||||||||||| || || ||||| Sbjct 6264 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCACCAGATCAG 6323 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| ||||| | | | || || || ||| Sbjct 6324 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAAC 6383 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| |||||||| ||| | ||| | ||| | | ||||| Sbjct 6384 ATCCAGAAGGAGTCGACACTCCACCTCGTGCTCCGACTTAGAGGAGG 6430 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || ||||| |||||| || Sbjct 7620 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAAGTCGAAGCCTCC 7679 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || |||||||||||||| || || || || || || || Sbjct 7680 GACACAATCGAAAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCGCCAGACCAG 7739 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || || ||||| |||||||| |||||| | | | || || || ||| Sbjct 7740 CAGAGACTTATTTTCGCCGGAAAACAGCTTGAGGATGGCCGCACGCTCTCTGACTACAAC 7799 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| |||||||| ||| | || | || | || ||||| Sbjct 7800 ATCCAGAAGGAGTCGACACTCCACCTTGTTCTCCGTCTCCGTGGAGG 7846 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || ||||| || || |||||||| || || | Sbjct 7116 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAAACCATCACTCTCGAAGTTGAGGCATCG 7175 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| |||||||| || ||||| || || ||||| Sbjct 7176 GACACCATTGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATCCCGCCAGATCAG 7235 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || | | ||||||||||| Sbjct 7236 CAGAGACTTATCTTTGCCGG 7255 >seq18085 Length=168442 Score = 116 bits (128), Expect = 3e-21 Identities = 306/464 (66%), Gaps = 10/464 (2%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| || ||||| |||| | || | |||| || ||||| | || ||| |||||||| Sbjct 27158 TTTGTCGACAGTGAACTGAACAGCGTTGACGGCCGGCTTCGTGCGCAAATAGTACATTCC 27217 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 ||| || | || || | ||| |||| | ||| ||||| |||| ||||| | || Sbjct 27218 CGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATCGAGGTGATGGTGGCGTAGCTAGG 27277 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 || |||| | ||||| ||||| || ||||| ||| | || || || || || Sbjct 27278 CTTGGCCATATGAATGTTCAACGACTGCGATTGATCAATGTAGGCTCCACGGTCCGCCGC 27337 Query 138333 CATGTTAATTAAATTTTTACTTTT----CATCTCCCACACGGTCTTGTATAGATCACGAA 138388 ||| | || | | | ||||| ||||||||||| || ||| || || | | Sbjct 27338 CATCTCGATAA----TCTCCTTTTGTGGAATCTCCCACACAGTGCGGTACAGCTCCTGGA 27393 Query 138389 TATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTC 138448 || ||| ||| |||| | || ||| |||||| ||||| | || || Sbjct 27394 GATCGGTCGGAATTCCCTCAATGTCTTTGATGGATCCGTTGTTGGCAATCAGACGGTTCT 27453 Query 138449 TCATGTCATCGTTGTACAGATTCA-ACTTGATCAAGTCGTTTATCAGATATCTGTTTATG 138507 |||| |||||||| ||| || || || | |||||| || | || | | ||| | Sbjct 27454 TCATCTCATCGTTCCACA-ATCCACGCTCCACCAAGTCCTTGAGCATGTGTGGGTTGACA 27512 Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 | ||| || ||||||| | || |||||| ||| ||||| |||| | ||||| | | Sbjct 27513 ATCTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTTGAGGTGTACGGCTCGATC 27572 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCAT 138611 || || |||||||| || ||||| || |||| || |||||||| Sbjct 27573 GACTCATTGTTTCCGAGTATCTGGGCAGTGGAAGCCGTCGGCAT 27616 >seq17886 Length=112081 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| || ||||| |||||||| || ||| || Sbjct 4970 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCC 4911 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 4910 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 4851 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | |||||||| ||||| Sbjct 4850 CAAAGATTGATCTTCGCCGG 4831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449791778460760