Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq17577 100 2e-16 >seq17577 Length=396311 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 34504 AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCT 34563 || ||||| || ||||||| ||| || ||||||||||||||| || ||||| || ||| Sbjct 141830 AGAGCCTTAGCAATTTCGGACATATTCGAGATGACAGTCTTGATTCCATTGCCTTTACCT 141771 Query 34564 TCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGG 34623 || || || ||| ||| ||||| |||||||||||||||| ||| || || |||| Sbjct 141770 TCAACTTTCGCGGAGAGCTTGGGCATCTTGTAGCGGTAGAACGGGTCAGCGACCGAGCGG 141711 Query 34624 TTAACGTT 34631 || ||||| Sbjct 141710 TTCACGTT 141703 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 34350 CACAAACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCC 34409 ||||||||| |||||| ||||| || | ||| || | ||| || |||||| || Sbjct 142034 CACAAACTTTTTGATGAACCCATCCAGAATGTCTTGCAGCTTGTTGGCGTCGTGTTCTCC 141975 Query 34410 GTTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCC 34469 ||| || ||| | |||||||||||| ||| | | ||||| || || ||||| || || Sbjct 141974 GTTCACAATGTAGCGTTCGTTTTTGGCATCAAAATTGGTTTGAGCTCCGAGCTCACAGCC 141915 Query 34470 GAAGTACTTTGTCGGGT 34486 |||||||| ||||||| Sbjct 141914 AAAGTACTTGGTCGGGT 141898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412746922132781