Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq17868 152 3e-32 >seq17868 Length=20976 Score = 152 bits (168), Expect = 3e-32 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| |||||||| ||| |||| |||| |||| ||||||||||||||| Sbjct 7079 CTCCTTTTGAATGTTGTAGTCCGACAGGGTGCGACCATCTTCCAATTGCTTTCCGGCGAA 7020 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||||| ||| |||||| | || | ||||| ||||| | ||||| |||||| Sbjct 7019 GATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATTTTGGCTTTGACATT 6960 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || ||||||||| |||| || ||||||||||| || | ||||| || Sbjct 6959 TTCGATAGTGTCGGAGGCCTCGACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGAC 6900 Query 34966 AAAGATCTGCAT 34977 |||||| ||||| Sbjct 6899 AAAGATTTGCAT 6888 Score = 134 bits (148), Expect = 9e-27 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || |||| |||| || || || ||||||||||| Sbjct 7811 CTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAA 7752 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || |||| ||||||||| |||| | ||||||||||| | || || || || Sbjct 7751 AATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACATT 7692 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || ||| ||||| |||| ||| ||||||||||| ||||||||||| || Sbjct 7691 TTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTCAC 7632 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 7631 GAAGATCTGCAT 7620 Score = 131 bits (144), Expect = 1e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| |||||||||||||| ||| |||| |||| || || |||||||||||||| Sbjct 6851 CTCTTTCTGGATGTTATAGTCCGAGAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAA 6792 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||||| ||||||||| | || | || |||||||| | || || |||||| Sbjct 6791 GATCAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 6732 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || ||||| || || | || || |||||||| ||||||||||| || Sbjct 6731 TTCGATAGTGTCTGATGCCTCAACTTCCAAAGTGATAGTCTTTCCAGTGAGGGTCTTCAC 6672 Query 34966 AAAGATCTGCAT 34977 || || ||||| Sbjct 6671 GAAAATTTGCAT 6660 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| ||||| ||| ||||| ||||| || ||||| | Sbjct 6660 TTCCTCCTCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGG 6601 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | |||| |||| ||||| ||||||||||| |||||||||| |||||||||| | | Sbjct 6600 ACAATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTG 6541 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | |||||| ||| ||| | || | || ||| |||| Sbjct 6540 GGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGA 6481 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || |||||||| || | ||||| || ||||||||||| Sbjct 6480 CTTCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 6432 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || || ||||| | || ||||||||| ||||| ||||| | Sbjct 6432 TTCCTCCTCTAAGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGG 6373 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || |||| | || || || ||||| ||||||||||| || || ||||| ||| | | Sbjct 6372 AGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTG 6313 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || ||||| | || || ||||| | | || | || |||||| | Sbjct 6312 GAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAA 6253 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 6252 CCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCAT 6204 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || || ||||| | || ||||||||| ||||| ||||| | Sbjct 7620 TTCCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGG 7561 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || |||| | || || || || ||||||||||||||||||| |||||| ||| | | Sbjct 7560 AGAGAGTGCGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTG 7501 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || ||||| | | || | || ||| |||| Sbjct 7500 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCGA 7441 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || ||||||||||| || | ||||| ||||| || ||||| Sbjct 7440 CCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 7392 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || || ||||| | || ||||||||| |||||||| || | Sbjct 6204 TTCCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGG 6145 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| |||| |||| || || ||||||||||||||||| |||| |||||| ||| | | Sbjct 6144 AGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAG 6085 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || || || | | || | || |||||| | Sbjct 6084 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAA 6025 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | || | ||| || || ||||| || | || || || || || ||||| || Sbjct 6024 CCTCGAGGGTGATCGTTTTTCCGGTCAAAGTTTTGACGAAAATTTGCATAAT 5973 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| || || || ||||| ||||| || ||| | || |||| Sbjct 8334 AGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCATCC 8275 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||||| || ||||| ||| | || | ||||||||||| Sbjct 8274 TCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 8215 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || || ||||| |||| ||| || || Sbjct 8214 TGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAGGGTGATAGTT 8155 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| || ||||| ||||| Sbjct 8154 TTTCCAGTTAAAGTCTTGACGAAGATTTGCAT 8123 Score = 82.4 bits (90), Expect = 5e-11 Identities = 107/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||| || || |||| ||||||||| | || | ||||| ||||| | || || Sbjct 7991 CTTACCGGCAAAAATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGAATCTT 7932 Query 34894 TTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 ||||| || || || | || ||||| || |||| ||| ||||||||||| Sbjct 7931 GGCCTTGAC--ATTCTCAATGGTGTCGGATGCCTCAACCTCAAGGGTGATGGTCTTTCCG 7874 Query 34952 GTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||||| || ||||||||||| Sbjct 7873 GTGAGGGTCTTGACGAAGATCTGCAT 7848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325618108157723