Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq17868 91.5 2e-13 >seq17868 Length=20976 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || || ||||| || || || |||| || || || Sbjct 6889 TGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAGGCCTCCG 6948 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| ||| ||||| ||| ||||| || || ||||| || |||| Sbjct 6949 ACACTATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAGGGAATCCCACCAGACCAAC 7008 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || || || || || ||||| || ||| | | || | | || || || | Sbjct 7009 AAAGACTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCCTGTCGGACTACAACA 7068 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| || ||||| ||||| | || | || | ||||||||| Sbjct 7069 TTCAAAAGGAGTCGACACTCCATCTCGTTCTCCGTCTCCGAGGAGGTA 7116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785981483835640