Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq17187 237 1e-56 seq18150 226 2e-53 >seq17187 Length=48460 Score = 237 bits (262), Expect = 1e-56 Identities = 712/1080 (66%), Gaps = 27/1080 (3%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || || || || || |||||||| |||||||| || || ||||| | ||| |||||||| Sbjct 46098 GTAGACTTGTCTGCAGCAGTCACGTTAAGAATTCCGTTTGCATCGATATCGAATGTGACG 46157 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 ||||||||||| | || | | || |||||||| || | | || ||||| ||| Sbjct 46158 TCAATTTGAGGAATACCGCGTGGTGCCGGTGGGATTCCAGTGAGTTCGAAAGTTCCAAGA 46217 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 | ||| ||| ||| | | ||||| |||||| ||| ||| || | || | | | Sbjct 46218 CGGTGATTGTCTCGAGTCATTGCACGTTCTCCCTCGTAAACTTGAATGGAGACGCCTGGT 46277 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 281650 || || || | || || || || |||| || ||||| |||||| | Sbjct 46278 TGGTTGTCGGCGTATGTGGTGAACGTCTTGGAAGCCTTGGTTGGAATGCGTGTGTTGCGC 46337 Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710 || || | || ||||| || ||||| ||||| || | |||||| || |||| || Sbjct 46338 TCGATCAGGTTAGTCATCATTCCACCGGCTGTCTCGATTCCAAGACTGAGCGGAGCCACG 46397 Query 281711 TCAACTAGGACAATAT-TTTGA-AGTTTTTCATCAGTTTGA--CCAACAAGAATAGCTGC 281766 || || || | || | ||||| || ||| ||| |||| ||| ||||| ||| || Sbjct 46398 TCGACGAGCAGAACGTCTTTGATAG--TTTGATC--CTTGACTCCAGAAAGAACAGCGGC 46453 Query 281767 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTT 281826 ||| | || |||||| ||||||| |||||||| ||||| | | || |||| || Sbjct 46454 TTGCACGGCGGCACCAAATGCAACCGCTTCATCCGGATTGATCGAGCAGTTGAGTTCCTT 46513 Query 281827 ACCATTGAAAAAAT--TTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCC 281883 || |||||||| | ||| || || | ||| | ||| || | |||| |||||||| Sbjct 46514 GCCGTTGAAAAAGTCCTTG--AGCAGCT-TCTGGATCTTCGGCACCCGAGTCGATCCTCC 46570 Query 281884 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTC 281943 ||| | || | ||| | | | |||||| || || |||| ||| | | ||||||| Sbjct 46571 AACGAGCACCACTTCGTCTATTTTTGATTTGTCAAGCTTTGCATCACGAAGAGCTTTTTC 46630 Query 281944 AACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 282003 ||| ||||||||| | || | || || || || |||||||| || | ||| Sbjct 46631 AACTGGTTCAAGAGTCTTGCGGAAGAGATCGGAGCAGAGCTCTTCGAAACGGGCACGAGT 46690 Query 282004 AAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT 282063 | | | | ||||||| |||||||| | |||||| ||||| || || | || | Sbjct 46691 GATCTTTGAGTGAAAATCAATACCTTCGAAAAGAGAATCCACTTCGATTGTGGCTTCTGA 46750 Query 282064 CGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT 282123 ||| || || | | ||| |||||||| ||||| || | || | ||||| ||| Sbjct 46751 CGAGCTTGAAAGAGTTCTTTTGGCACGTTCGCATGCAGTTCGCAGACGTCGTATGGCACG 46810 Query 282124 TGCTGATTGATTCAAATCTGTTT--TATATTTTCTCTTGAAATC-TTCAACACACCATGT 282180 || ||||| | |||||| ||| | |||||| ||||| || |||| | || Sbjct 46811 TG--GATTGGGTGAAATCTCTTTGCCAGTTTTTCTTTTGAACTCGTTCATAAAGTGCTGC 46868 Query 282181 TACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTAC 282240 || | ||| | ||||| || || ||||| | | ||| | || | ||| | ||| || Sbjct 46869 AAC-ATACGTTGGTCAAAGTCCTCGCCTCCGAGATGAGTGTCACCAGCCGTCGATCTCAC 46927 Query 282241 TTGGAAAA---GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCAT 282297 || |||| ||| || | | || | | | ||||||| || |||||||||| Sbjct 46928 TTCAAAAATGGATCCTTCAGCGATCGAGAGGATGGAAACATCAAAAGTGCCACCACCCAG 46987 Query 282298 ATCAAAAATAAGTACATTCATTTCT-TTGTCT-TGGTTTTTATCAAGACCATACGCAAAA 282355 ||| || || || ||||| ||||| | || | ||| || || || || || | | Sbjct 46988 ATCGAAGATGAGCACATT--TTTCTCATCACTGATGCCTTTGTCGAGTCCGTAAGCGAGA 47045 Query 282356 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 282415 || ||||| |||||||| || || |||| | | || || || ||||| | | ||| Sbjct 47046 GCTGCAGCTGTTGGTTCGTTGATGATTCGGATGGCGTTGAGTCCGGCAATAGTGGCCGCA 47105 Query 282416 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCT 282475 ||||| || || || || || ||||| || ||||| || ||||| || || || ||| Sbjct 47106 TCTTTCGTCGCCTGCCTCTGACTGTCGTTGAAGTATGCCGGCACAGTGATTACAGCGTCT 47165 >seq18150 Length=702657 Score = 226 bits (250), Expect = 2e-53 Identities = 707/1082 (65%), Gaps = 31/1082 (3%) Strand=Plus/Minus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || || || || || |||||||| |||||||| || || ||||| | ||| |||||||| Sbjct 134609 GTAGACTTGTCTGCAGCAGTCACGTTAAGAATTCCGTTTGCATCGATATCGAATGTGACG 134550 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 ||||||||||| | || | |||| |||||||| || | | || ||||| ||| Sbjct 134549 TCAATTTGAGGAATACCGCGTGGAGCCGGTGGGATTCCAGTGAGTTCGAAAGTTCCAAGA 134490 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 | ||| ||| ||| | | ||||| |||||| ||| ||| || | ||| ||| | Sbjct 134489 CAGTGATTGTCTCGAGTCATTGCACGTTCTCCCTCGTAAACTTGAATGGAAACGCCAGGT 134430 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 281650 || || || | || || || || |||| | ||||| ||||| | Sbjct 134429 TGGTTGTCGGCGTATGTGGTGAACGTCTTGGAAGCCCTGGTTGGAATGTGCGTGTTGCGT 134370 Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710 || || | ||| |||||||| || || || || |||| |||||| || |||| || Sbjct 134369 TCTATCAGATTAGTCATAATTCCGCCGGCCGTCTCTATGCCAAGACTGAGCGGAGCCACG 134310 Query 281711 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGA--CCAACAAGAATAGCTGCTT 281768 || || || | || | || | |||| ||| ||||| ||| ||||| ||| |||| Sbjct 134309 TCGACGAGCAGAACGTCTTTGATATTTTGATC--TTTGATTCCAGAAAGAACAGCGGCTT 134252 Query 281769 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 281828 ||| || |||||| ||||||| | ||| || ||||| | | ||| |||| || | Sbjct 134251 GAACTGCGGCACCAAATGCAACCGATTCGTCCGGATTGATCGAGCAATTGAGTTCCTTGC 134192 Query 281829 CATTGAAAAAAT--TTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAA 281885 | |||||||| | |||| | | | ||| | ||| || | |||| |||||||||| Sbjct 134191 CGTTGAAAAAGTCCTTGA--GCATCT-TCTGAATCTTCGGCACCCGAGTCGATCCTCCAA 134135 Query 281886 CTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAA 281945 | | ||| | ||| | | | |||||| || || |||| ||| | | ||||||| | Sbjct 134134 CGAGTACCACTTCGTCTATTTTTGATTTGTCAAGCTTTGCATCACGAAGAGCTTTTTCGA 134075 Query 281946 CGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA 282005 | ||||||||| | || | || || || || || ||||| || | ||| | Sbjct 134074 CTGGTTCAAGAGTCTTGCGGAAGAGATCGGAGCAGAGCTCCTCGAAGCGGGCACGAGTGA 134015 Query 282006 -----GAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG 282060 ||||| || ||||| | ||||||| | | |||| ||||| || | | || Sbjct 134014 TCTTTGAGTG-CA----AATCAGTAGCTTCGAAAAGACAATCCACTTCGATTTTGGCTTC 133960 Query 282061 AGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC 282120 | ||| || || | | ||| |||||||| ||||| || | || | |||| ||| Sbjct 133959 TGACGAGCTTGAAAGAGTCCTTTTGGCACGTTCGCATGCAGTTCGAAGACGCCGTATGGC 133900 Query 282121 TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGT 282180 || ||||| || |||| | || | ||| ||| || || || | || Sbjct 133899 ACGTG--GATTGGTTGAAATGTCCTTACCAGTTTTCCTTTTAAACTCGTTCATAAAGTGC 133842 Query 282181 TACA--AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238 | || | ||| | ||||| || || ||||| | | ||| | ||| | ||| | ||| Sbjct 133841 TGCAACATACGTTGGTCAAAGTCCTCGCCTCCGAGGTGAGTGTCTCCAGCCGTCGATCTC 133782 Query 282239 ACTTGGAAAAG---TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCC 282295 |||| ||| || ||| || | | || | | | ||||||| || ||||||||| Sbjct 133781 ACTTCGAAGAGGGATCCTTCAGCGATGGAGAGGATGGAAACATCAAAAGTGCCACCACCC 133722 Query 282296 ATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT--TTTATCAAGACCATACGCAA 282353 | ||| || || || ||||| ||||| || || ||| || || || || || | Sbjct 133721 AGATCGAAGATGAGCACATT--TTTCTCATCACTGATTCCTTTGTCGAGTCCGTAAGCGA 133664 Query 282354 AAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTG 282413 ||| ||||| |||||||| || || |||| | | || || || ||||| || | | Sbjct 133663 GAGCTGCAGCTGTTGGTTCGTTGATGATTCGGATGGCGTTGAGTCCGGCAATAGTTGCCG 133604 Query 282414 CATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 ||||||| || || || ||||| ||||| || || || || ||||| || || || | Sbjct 133603 CATCTTTCGTCGCCTGCCTTTGACTGTCGTTGAAGTAGGCCGGCACAGTGATTACAGCGT 133544 Query 282474 CT 282475 || Sbjct 133543 CT 133542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739706564820642