Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq17868 178 3e-39 seq17886 95.1 2e-14 >seq17868 Length=20976 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | || ||||| ||||| || || ||||| || || ||||| || || || Sbjct 6658 CCTCCTCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGAC 6599 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| || || ||||| |||||||| |||||||| || ||||| || Sbjct 6598 AATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGG 6539 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| |||||||| |||||||| || || ||||| || || | ||| ||| Sbjct 6538 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACT 6479 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || |||||||| || ||||| ||||| || || ||||||||| Sbjct 6478 TCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 6431 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| || || | ||| ||||| || || ||||| || || || || || Sbjct 7618 CCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 7559 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||| || || |||||||| || ||||| |||||||| |||||||| || Sbjct 7558 AGAGTGCGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGG 7499 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || |||||||| || || || | ||| || Sbjct 7498 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCGACC 7439 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || ||||| ||||| ||||| || |||||| Sbjct 7438 TCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCATT 7391 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| || || | ||| ||||| || || ||||| || |||||||| || Sbjct 6202 CCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAG 6143 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || ||||| || ||||| |||||||| ||||||||||| Sbjct 6142 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAGGA 6083 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || |||||||| || || || | || || Sbjct 6082 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAACC 6023 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || | || ||||| || || ||||| || || || || || ||||| || Sbjct 6022 TCGAGGGTGATCGTTTTTCCGGTCAAAGTTTTGACGAAAATTTGCATAAT 5973 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||| ||||| | || || || || || || || || || || || | Sbjct 7116 TACCTCCTCGGAGACGGAGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCG 7057 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| | ||| ||||| || ||||| ||||||||||| ||||| | Sbjct 7056 ACAGGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTG 6997 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || ||||| || || ||||| |||||||| || || || | || | Sbjct 6996 GGATTCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGA 6937 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | || || ||||| || ||||| ||||| ||||| || |||||| Sbjct 6936 CCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 6887 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | || ||||| || |||||||| || ||||| || || Sbjct 6886 CCTCCGCGGAGACGGAGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCGAG 6827 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || ||||| || ||||| ||||| || || ||||| || Sbjct 6826 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGTGGG 6767 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || || ||||| || || || | || ||| Sbjct 6766 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAACT 6707 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || ||||| || || | ||||| || || || |||||| Sbjct 6706 TCCAAAGTGATAGTCTTTCCAGTGAGGGTCTTCACGAAAATTTGCATT 6659 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | || || || | ||| || || || || ||||| || || || || || Sbjct 6430 CCTCCTCTAAGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAG 6371 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || || ||||| || | || |||||||| || Sbjct 6370 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTGGA 6311 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || || ||||| || || ||||||||||| || || | || || Sbjct 6310 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAACC 6251 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| ||||| | ||||| || || ||||||||| Sbjct 6250 TCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCATT 6203 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| ||||| || |||||||| || ||||| ||||| ||||||||||| ||| Sbjct 7255 CCGGCAAAGATAAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGCT 7196 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || || | || ||||| | ||| || || || || || | Sbjct 7195 TTGACATTCTCAATGGTGTCCGATGCCTCAACTTCGAGAGTGATGGTTTTTCCAGTGAGA 7136 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 7135 GTCTTGACGAAGATCTGCAT 7116 >seq17886 Length=112081 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| | |||||| |||||||| || ||||||||||| ||||| ||||| || Sbjct 4831 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCC 4890 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || || ||||| | || ||||| | || || ||||| || |||| Sbjct 4891 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGA 4950 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| Sbjct 4951 GTCTTGACGAAGATTTGCAT 4970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981590488518963