Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq18085 134 1e-26 seq17868 129 6e-25 >seq18085 Length=168442 Score = 134 bits (148), Expect = 1e-26 Identities = 219/312 (70%), Gaps = 5/312 (2%) Strand=Plus/Plus Query 148644 TCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCG 148703 ||||| || ||||| ||||| | ||||| || || || ||||| ||| ||| || Sbjct 29023 TCGGCGAGACCCTGAACGCCGAGTCCAATCGGGCGATGACGCATGTTCGAGTTGCGAGCC 29082 Query 148704 CTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTT 148763 ||||| |||||||| ||| |||||||||||||| || ||||| | ||| ||| Sbjct 29083 TCCTCGACCGGATAGTAGTTCACGTCGATGATCTTGTTCAGGTTGCGAGTGATCACTTTT 29142 Query 148764 GT-AATTCTGCGCAGCAATTCAAAATCGTACTTGTCATCTACGATG---CATCGGTTCAC 148819 || | ||| ||| ||| |||| || |||| | || | || | ||||||| Sbjct 29143 GTCACTTCGGCG-AGCTTCACAAAGTCAAACTTCTTCTCGTGGGTGACAAACCGGTTCAA 29201 Query 148820 GGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTC 148879 || |||||||| |||||||| || || |||||||||| || |||||||| |||||| Sbjct 29202 CGCAATAGAGGCAAGATTGCAGACAGCGATCTCATCCGGAGCAGAGTACTCTATGATCTC 29261 Query 148880 GGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 || ||||| ||| ||||||||| || | ||||| || || || ||||| | Sbjct 29262 GGTGCACAAATTCGAGCATTTGATGGTTCCAAGGTTCTGCTGGTTTGATTTTCTGTTAGA 29321 Query 148940 CGCGTCCTTGTA 148951 ||||| ||||| Sbjct 29322 GGCGTCTTTGTA 29333 >seq17868 Length=20976 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || || |||||| | ||| ||| | |||||||||||||| || Sbjct 6172 GTTGACTCCTTCTGGATGTTATAATCGGAGAGGGTGCGACCA-TCCTCGAGCTGCTTTCC 6114 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| | ||||| || ||||| || ||||||||||| |||||| ||| Sbjct 6113 GGCGAAGATGAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTT 6054 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| || ||| || |||| ||||| ||||| ||||||| ||| Sbjct 6053 AACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTGATCGTTTTTCCGGTCAAAGT 5994 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||| ||||| Sbjct 5993 TTTGACGAAAATTTGCAT 5976 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| | |||| |||||||||||||||||| Sbjct 6400 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 6341 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || |||||||| || || || || ||||| ||||| |||||| |||| Sbjct 6340 GCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTG 6281 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||||| || ||| || |||| ||||| ||| || || || || || Sbjct 6280 ACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTC 6221 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 6220 TTCACGAAGATCTGCAT 6204 Score = 102 bits (112), Expect = 8e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || || || |||||||| ||| || ||| | | | || || |||||||| || Sbjct 6628 GTGGATTCCTTTTGAATATTGTAGTCGGACAATGTGCGTCCA-TCTTCCAGCTGCTTTCC 6570 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || | || || | |||||||| || ||||| ||||||||||| ||| |||||| | Sbjct 6569 GGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTC-TTGAATTTTTGCTT 6511 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||||| || || || || | |||| || || ||||||| || Sbjct 6510 TCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAATGTGATCGTCTTTCCGGTCAAAG 6451 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 6450 TCTTGACGAAGATCTGCAT 6432 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| ||| |||||||||||| || || Sbjct 7588 GTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACC-GTCCTCGAGCTGTTTTCC 7530 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || | ||||| || || ||||| ||||||||||| |||||| ||| Sbjct 7529 GGCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTT 7470 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| || || || || | |||| ||| || ||||||| ||| Sbjct 7469 GACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTCTTTCCGGTCAAAGT 7410 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||| ||||| Sbjct 7409 CTTCACAAAAATTTGCAT 7392 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || || || || | ||| ||| | ||||| |||||||| || Sbjct 6856 GTTGACTCTTTCTGGATGTTATAGTCCGAGAGGGTGCGACCA-TCCTCAAGCTGCTTTCC 6798 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || | ||||||||| || ||||| ||||||||||| |||||| ||| Sbjct 6797 GGCGAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTT 6738 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | |||| || || || || || || Sbjct 6737 GACGTTTTCGATAGTGTCTGATGCCTCAACTTCCAAAGTGATAGTCTTTCCAGTGAGGGT 6678 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 6677 CTTCACGAAAATTTGCAT 6660 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || ||||| ||| | || | | | |||||||||||||| || Sbjct 8319 GTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCA-TCCTCGAGCTGCTTTCC 8261 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||| || || || || || |||||||| |||||| ||| Sbjct 8260 AGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTT 8201 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | || || || | ||||| ||||| || || | ||| Sbjct 8200 GACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAGGGTGATAGTTTTTCCAGTTAAAGT 8141 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 8140 CTTGACGAAGATTTGCAT 8123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483307093385080