Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq17868 105 4e-18 >seq17868 Length=20976 Score = 105 bits (116), Expect = 4e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||| | || |||||| |||||||| |||||||| |||||||| || || | Sbjct 8338 ACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCC 8279 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | || ||||| || || |||||||||||||||||| | || | || || || Sbjct 8278 ATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTT 8219 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | | || | || | ||||||| || ||| || |||| |||| Sbjct 8218 GTCTTGGATCTT-GGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAGGGTGA 8160 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || ||||| || || || ||||| ||||| Sbjct 8159 TAGTTTTTCCAGTTAAAGTCTTGACGAAGATTTGCAT 8123 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | ||||| || || ||| || ||||| || ||||| ||||| Sbjct 6658 CCTCCTCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGAC 6599 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||||| | || |||| || ||||||||||| |||| | ||||| ||| | || Sbjct 6598 AATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGG 6539 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| || || || | || | |||||| | ||| || Sbjct 6538 ATTCCTTCCTTGTCTTGAATTTT-TGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGAC 6480 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||||| || || || || || || || ||||||||||| Sbjct 6479 TTCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 6432 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | ||| | || ||||| ||| || || |||||||| |||||| Sbjct 7618 CCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 7559 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | ||||||||||| || |||| | ||||||||| | || Sbjct 7558 AGAGTGCGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGG 7499 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | | |||| || | ||||||| | ||| || Sbjct 7498 ATTCCTTCCTTGTCCTGGATCTT-GGCCTTGACATTTTCGATGGTGTCGGAGGCTTCGAC 7440 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||||| || || || || || || || ||||| || ||||| Sbjct 7439 CTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 7392 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | ||| | || ||||| ||| || || ||||| ||||||||| Sbjct 6202 CCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAG 6143 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || |||||||| || || | | ||||||||| | || Sbjct 6142 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAGGA 6083 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | | ||||| || | ||||||| | || || Sbjct 6082 ATTCCTTCCTTGTCCTGGATCTT-GGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAAC 6024 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||||||||| || || || ||||| || || || |||||| Sbjct 6023 CTCGAGGGTGATCGTTTTTCCGGTCAAAGTTTTGACGAAAATTTGCATA 5975 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||||||| ||||| |||| || | || || ||||| || Sbjct 6395 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 6336 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||||||| | || | ||||||||||| || || | | |||| Sbjct 6335 GATAAGGCGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTT-GGCCTTGACAT 6277 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||||| | || || || | ||||| || || ||||| | || || | Sbjct 6276 TTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTCA 6217 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 6216 CGAAGATCTGCAT 6204 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || ||||| ||||| | || || | ||||||||||| || Sbjct 7811 CTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAA 7752 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||| | | |||||| ||| |||| | ||| || ||||| || || ||| |||| Sbjct 7751 AATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGGATCTTGGCCTTC-ACAT 7693 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||| | ||| || |||| ||||| || || || || | || || | Sbjct 7692 TTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTCA 7633 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 7632 CGAAGATCTGCAT 7620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328628617592640