Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq17868 134 3e-26 >seq17868 Length=20976 Score = 134 bits (148), Expect = 3e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| |||||||| |||||||| ||| || ||| Sbjct 6435 CAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACATTGGAAGTCGAAGCCTCCGAC 6494 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||||||| |||||||| || |||||||| || ||| || Sbjct 6495 ACAATTGAGAACGTGAAAGCAAAA-ATTCAAGACAAGGAAGGAATCCCACCAGACCAGCA 6553 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||| ||||| |||||||||||| ||||||||||| | || ||| |||| ||||| | Sbjct 6554 AAGACTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGCACATTGTCCGACTACAATAT 6613 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || || || || || |||||| | ||| Sbjct 6614 TCAAAAGGAATCCACACTTCACTTGGTT 6641 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||||||||| | || || || || ||||| ||||| Sbjct 5990 CAAAACTTTGACCGGAAAAACGATCACCCTCGAGGTTGAGGCCTCCGACACCATCGAAAA 6049 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || ||||||||| || || |||||||| ||||| Sbjct 6050 TGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAGCAAAGACTCATCTT 6109 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| | || ||||| | || | ||||||| ||| ||||||| ||||| Sbjct 6110 CGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGATTATAACATCCAGAAGGAGTC 6169 Query 206364 TACTCTTCACCTTGT 206378 ||||| |||||||| Sbjct 6170 AACTCTCCACCTTGT 6184 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || |||||||||||||| || || ||||| ||||| Sbjct 6675 AAGACCCTCACTGGAAAGACTATCACTTTGGAAGTTGAGGCATCAGACACTATCGAAAAC 6734 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || |||||||| || ||| || ||||| |||||| Sbjct 6735 GTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAGCAGAGACTGATCTTC 6794 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || ||||| | || | | || || ||| ||||||||||||| Sbjct 6795 GCCGGAAAGCAGCTTGAGGATGGTCGCACCCTCTCGGACTATAACATCCAGAAAGAGTCA 6854 Query 206365 ACTCTTCACCTTGT 206378 ||||| || ||||| Sbjct 6855 ACTCTCCATCTTGT 6868 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || ||||| | ||||| ||| || |||||| ||||| Sbjct 7635 AAGACCCTCACCGGAAAGACCATCACCCTTGAAGTCGAAGCCTCCGACACAATCGAAAAT 7694 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || || ||| ||| || |||||||| ||| Sbjct 7695 GTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCGCCAGACCAGCAGAGACTTATTTTC 7754 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| ||| | || ||||| | || | | || |||||| ||||||| ||||| Sbjct 7755 GCCGGAAAACAGCTTGAGGATGGCCGCACGCTCTCTGACTACAACATCCAGAAGGAGTCG 7814 Query 206365 ACTCTTCACCTTGTT 206379 || || ||||||||| Sbjct 7815 ACACTCCACCTTGTT 7829 Score = 104 bits (114), Expect = 6e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || ||| || ||||| ||||| || ||| Sbjct 7416 ACCGGAAAGACCATCACGCTTGAGGTCGAAGCCTCCGACACCATCGAAAATGTCAAGGCC 7475 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || |||||||| || || |||||||| |||||||||||||| Sbjct 7476 AAGATCCAGGACAAGGAAGGAATCCCACCAGATCAGCAAAGACTGATCTTCGCCGGAAAA 7535 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || || | ||| | |||| |||||| ||||||| ||||| ||||| ||| Sbjct 7536 CAGCTCGAGGACGGTCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCAACTCTCCAC 7595 Query 206374 CTTGT 206378 ||||| Sbjct 7596 CTTGT 7600 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || ||||| || ||||| | || || || || ||| Sbjct 6891 CAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAGGCCTCCGAC 6950 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| || ||||| ||||| ||||| || ||| || Sbjct 6951 ACTATCGAAAATGTCAAAGCCAAA-ATCCAAGACAAAGAGGGAATCCCACCAGACCAACA 7009 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||| ||||||||||||||||| ||||||||||| | || || | || |||||| | Sbjct 7010 AAGACTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCCTGTCGGACTACAACAT 7069 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || || ||||| || || || || ||| Sbjct 7070 TCAAAAGGAGTCGACACTCCATCTCGTT 7097 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || ||||| | || || || || ||||| | ||| Sbjct 6219 AAGACCCTCACAGGAAAGACCATCACCCTCGAGGTTGAGGCCTCCGACACCATTGAAAAT 6278 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||||||| || || || | ||||||||| Sbjct 6279 GTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCACCAGATCAGCAGCGCCTTATCTTC 6338 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | |||| |||||| ||||||| ||||| Sbjct 6339 GCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAACATCCAGAAGGAGTCG 6398 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||||| || | ||||| || Sbjct 6399 ACACTCCACCTCGTGCTCCGACTTAGA 6425 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || |||||||| ||||| | || || ||| || ||||| ||||| || ||| Sbjct 8147 ACTGGAAAAACTATCACCCTTGAGGTCGAAGCATCCGACACCATCGAAAACGTCAAGGCC 8206 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| || || || | | |||||||| |||||| Sbjct 8207 AAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGAAAG 8266 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||| | || | |||| |||||| |||| ||||| || ||||||||| Sbjct 8267 CAGCTCGAGGATGGCCGTACCCTCTCCGACTACAACATCCAAAAAGAATCCACTCTTCAC 8326 Query 206374 CTTGT 206378 ||||| Sbjct 8327 CTTGT 8331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181535871499457