Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq17868 84.2 2e-11 >seq17868 Length=20976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || ||||| || ||| | ||| || ||| |||||||| || |||| Sbjct 6171 TTGACTCCTTCTGGATGTTATAATCGGAGAGGGTGCGACCATCCTCGAGCTGCTTTCCGG 6112 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| || | || ||||||||||| || ||||| || || || || || | Sbjct 6111 CGAAGATGAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAA 6052 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | || |||| | ||| || |||| || | |||||| || |||| ||||| Sbjct 6051 CATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTGATCGTTTTTCCGGTCAAAGTTT 5992 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 5991 TGACGAAAATTTGCAT 5976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476499095088120