Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq17868 118 9e-22 >seq17868 Length=20976 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || || |||||||| ||||||| | |||||||||||| | Sbjct 6432 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACATTGGAAGTCGAAGCCTCC 6491 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||| ||||||| || || || || || || || || ||| Sbjct 6492 GACACAATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 6551 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 |||||||| || | | ||| || || || ||||||| | | |||| ||| |||| Sbjct 6552 CAAAGACTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGCACATTGTC--CGACTACA 6609 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||| |||||||| |||| || || | | | |||||||||| Sbjct 6610 ATATTCAAAAGGAATCCACACTTCACTTGGTTCTCCGCCTCAGAGGAGGAA 6660 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| || ||||||||| ||||||| |||| || || ||| | Sbjct 5976 ATGCAAATTTTCGTCAAAACTTTGACCGGAAAAACGATCACCCTCGAGGTTGAGGCCTCC 6035 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || || || || || || || || || |||||| Sbjct 6036 GACACCATCGAAAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 6095 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||||||| | || ||| || || ||||| |||| | | | || |||||| || Sbjct 6096 CAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGATTATAAC 6155 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || || || || | || | ||| | | | |||||||||| Sbjct 6156 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCAGAGGAGGAA 6204 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || |||||||| | |||||| | || ||||||||| | Sbjct 7392 ATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAAGCCTCC 7451 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || || || || || || || || || |||||| Sbjct 7452 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 7511 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| || | || ||| ||||| ||||| || | | | | | || ||| ||||| Sbjct 7512 CAAAGACTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGCACTCTCTCCGACTACAAC 7571 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || || || || | || | ||| | | | |||||||||| Sbjct 7572 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCAGAGGAGGAA 7620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444989708233440