Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq17868 109 5e-19 >seq17868 Length=20976 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||| ||||| |||| ||| || || | || ||||||||||| || ||||| Sbjct 6622 TCCTTTTGAATATTGTAGTCGGACAATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAG 6563 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 |||| | |||||||| | || | | ||||||| | ||| |||||| |||| | Sbjct 6562 ATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACGTT 6504 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | ||| || |||| |||||||| || || |||||||| || || Sbjct 6503 CTCAATTGTGTCGGAGGCTTCGACTTCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGAC 6444 Query 35725 AAATATCTGCATTC 35738 || |||||||||| Sbjct 6443 GAAGATCTGCATTC 6430 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| ||||||| | ||| || | || || |||||||| || || || Sbjct 6167 CTCCTTCTGGATGTTATAATCGGAGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAA 6108 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | | ||||| || | ||||| | ||||||||| |||||| ||| | | | Sbjct 6107 GATGAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATT 6048 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| | || ||||| | ||||||||||| || ||||||||||| || Sbjct 6047 TTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTGATCGTTTTTCCGGTCAAAGTTTTGAC 5988 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 5987 GAAAATTTGCAT 5976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | || ||| || | || |||| ||||| || || || Sbjct 7079 CTCCTTTTGAATGTTGTAGTCCGACAGGGTGCGACCATCTTCCAATTGCTTTCCGGCGAA 7020 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 |||| | || ||||| | || | | ||| ||||| ||| ||| || || | | Sbjct 7019 GATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCTTGGAT-TTTGGCTTTGACAT 6961 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| | || ||||| | |||||| || || || |||||||| || | Sbjct 6960 TTTCGATAGTGTCGGAGGCCTCGACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGA 6901 Query 35724 CAAATATCTGCATTC 35738 |||| || ||||||| Sbjct 6900 CAAAGATTTGCATTC 6886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450687567710360