Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq17868 145 8e-30 seq18085 91.5 1e-13 >seq17868 Length=20976 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | ||| ||||| || || || ||||| || |||||||||||| Sbjct 7620 TTCCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGG 7561 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| || ||| ||||||||||| || || || |||| | |||||||| || | Sbjct 7560 AGAGAGTGCGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTG 7501 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || || ||||| || | |||||||| | ||| | Sbjct 7500 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCGA 7441 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || ||||| ||||| || || |||||||||||| Sbjct 7440 CCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCATT 7391 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | || || | ||| ||||| || |||||||| ||||| |||||||||||| Sbjct 8350 TCCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGA 8291 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | ||| | || |||||||| || || || || ||||||||||||||||| || || Sbjct 8290 GAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 8231 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || ||||| || || ||||| || | |||||||| | ||| || Sbjct 8230 AATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGAC 8171 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || ||||| || |||||||| || ||||| ||||||||| Sbjct 8170 CTCAAGGGTGATAGTTTTTCCAGTTAAAGTCTTGACGAAGATTTGCATT 8122 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | || | ||| || ||||||||||||||||| ||||||||| Sbjct 6660 TTCCTCCTCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGG 6601 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || ||||| || || ||||| |||| | ||||| || || | Sbjct 6600 ACAATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTG 6541 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || |||||||||||| ||| || || | ||||||||| | ||| | Sbjct 6540 GGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGA 6481 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | || || || || ||||| ||||| || ||||| || |||||| Sbjct 6480 CTTCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 6431 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| ||||| | ||||||||| || || || ||||| || |||||||||||| Sbjct 6432 TTCCTCCTCTAAGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGG 6373 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | ||| |||||||| ||||| || || || | ||||||||||| || | Sbjct 6372 AGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTG 6313 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| || || || || ||||| || | |||||||| | || | Sbjct 6312 GAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAA 6253 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | ||||| || ||||| || || || | || || ||||| || |||||| Sbjct 6252 CCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCATT 6203 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | ||| ||||| || || || ||||| || ||||| || ||| Sbjct 6204 TTCCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGG 6145 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| || || |||||||| || || || || || | | |||||||| || | Sbjct 6144 AGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAG 6085 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || || || || || | |||||||| | || | Sbjct 6084 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAA 6025 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || || ||||| ||||| |||||||| |||||||||||||| Sbjct 6024 CCTCGAGGGTGATCGTTTTTCCGGTCAAAGTTTTGACGAAAATTTGCAT 5976 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| ||| || | ||||| || || || || |||||||||||||||||||| Sbjct 7114 CCTCCTCGGAGACGGAGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGAC 7055 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || | || || || || || |||| | || || || || || Sbjct 7054 AGGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGG 6995 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| ||||| |||||| || | |||||||| | || || Sbjct 6994 ATTCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGACC 6935 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || ||||| ||||| || || || ||||||||| Sbjct 6934 TCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 6887 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || ||||| || || || ||||| || ||||||||||| Sbjct 7846 CCTCCACGGAGACGGAGAACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGAG 7787 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || |||||||| || || ||||| | | |||||| || ||||| Sbjct 7786 AGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGGG 7727 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || || || || | ||||||||| | ||| || Sbjct 7726 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTTTCGATTGTGTCGGAGGCTTCGACT 7667 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || ||||| | || || ||||| || |||||| Sbjct 7666 TCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 7619 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | ||| || | ||| || || || || || || || || ||||| ||||| Sbjct 6888 TTCCTCCGCGGAGACGGAGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCG 6829 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| || || || ||||| || || || || |||| | |||||| || || | Sbjct 6828 AGAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGTG 6769 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || || ||||| || | ||||| || | || | Sbjct 6768 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAA 6709 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | ||| || || || || || | || || ||||||||||||||| Sbjct 6708 CTTCCAAAGTGATAGTCTTTCCAGTGAGGGTCTTCACGAAAATTTGCATT 6659 >seq18085 Length=168442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 287/440 (65%), Gaps = 11/440 (3%) Strand=Plus/Minus Query 7555 GAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGAC 7614 ||||| ||| || ||| || |||| || || | || || ||||| ||||| || | Sbjct 30452 GAACGTCCTCAGCAGATGTTGATGCGTGTCGCCATCGGAATACACGGAGAAGATATCGCT 30393 Query 7615 GCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTTA---CGCACGCTTCGCCC 7671 | ||| | ||||||||| | ||||||| | ||| ||| | ||||||| || || Sbjct 30392 TCAGCCATCGAAACGTACAATTTGATGTC---GGAACGGTTCATGACGCACGCCTCTCCA 30336 Query 7672 ACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATG 7731 || | || | | || ||| | ||| ||| |||| ||||| || |||| || ||| Sbjct 30335 ACTCTTTTCAACTCTGGAACATGCCGGCCACAAATGTCGTCGTGCTTCCTGCTCACGATG 30276 Query 7732 CGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAA 7791 | || ||| || || || || ||||||| | |||||| ||| || || Sbjct 30275 AGTGATGACTCGATTCTGGGAATCTATGACACGCTAAAACAATGCGCCCTTATATCGAAG 30216 Query 7792 TACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGC-ATCGT 7850 || || ||||| ||||| ||||| || | | || |||| ||| | | | || | Sbjct 30215 AGCGCAGGTGGAATCGGTCTCAACGTGCACAAGATTCGTGCCACCGG-ATCGGTGATTGC 30157 Query 7851 GTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGT 7910 ||||||||||| | | ||| | || ||| | ||||| | ||| ||| | | Sbjct 30156 TGGCACCAACGGAACGTCGAACGGACTGATTCCGATGCTTCGCGTCTACAACAACACTGC 30097 Query 7911 GCGACATGTAGACCAGGGGGGAAA---GCGCAAAGGCGCCGCTGCCATCTATTTGGAGCC 7967 || | || || ||||| || || |||| || || |||||||| ||||||| Sbjct 30096 TCGTTACGTCGATCAGGGTGGCAACAAGCGCCCGGGAGCGTTCGCCATCTACCTGGAGCC 30037 Query 7968 GTGGCACGCGGACATTTACG 7987 ||||||||| || |||| || Sbjct 30036 GTGGCACGCCGATATTTTCG 30017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505279523978840