Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq18085 205 1e-47 seq17418 104 3e-17 >seq18085 Length=168442 Score = 205 bits (226), Expect = 1e-47 Identities = 483/724 (67%), Gaps = 14/724 (2%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 |||||| || |||||||| |||||| | || || || || || |||||||| || Sbjct 29841 TTCGAACTCTTCTCCCCAGCAATCATCAAGCCCTGGGCACTCGCACGGGCACATCAAAGA 29900 Query 69576 CCACACATCATCATCCTTA---ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTAT 69632 ||| ||| | |||||| || |||||||| || | ||| || | ||| || || | Sbjct 29901 CCA---ATCCTGATCCTTTTCGACACGTTTCATGAACAAATCTGGCACCCAGAGTGCCAG 29957 Query 69633 AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 ||| ||||| | | | | ||||| ||| || ||||| || | |||||| Sbjct 29958 AAACAGATCACGAGCACGCTCCTCTTCGGGTCCAGTGTTTTTGCGGAGTGAAACAAACTC 30017 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCC 69752 | |||||| | ||||| || || || || || || | ||||||| || || || || Sbjct 30018 GAAAATATCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCC 30077 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATT 69812 |||||||| | ||| | |||||||| || ||||| | ||||||||||| | || || Sbjct 30078 ACCCTGATCGACGTAACGAGCAGTGTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTT 30137 Query 69813 AGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAG 69872 || | || || || |||| ||| ||| | || ||||| || | || Sbjct 30138 CGACGTTCCGTTGGTGCCAGCAATCACCGATCCGGTGGCACGAATCTTGTGCACGTTGAG 30197 Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 ||| ||||| ||||| | || || || || || || |||| | |||||||| || || Sbjct 30198 ACCGATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGATTCC 30257 Query 69933 CTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGT 69992 | || ||||| |||| | || || || || |||||||| | | || Sbjct 30258 CAGAATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGCATGT 30317 Query 69993 TCCCGCATTAAATAATGTAGGAGATGCGTGAGT---GAACCATTTTTCAGAAAGCAGATT 70049 ||| | || || | || ||||| ||||| || ||||| || | || | || ||| Sbjct 30318 TCCAGAGTTGAAAAGAGTTGGAGAGGCGTGCGTCATGAACCGTT---CCGACATCAAATT 30374 Query 70050 GTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCA 70108 ||| ||||| || ||||| | ||||| | | | || ||||| || ||||||||||||| Sbjct 30375 GTACGTTTCGATGGCTGAAGCGATATCTTCTCCG-TGTATTCCGATGGCGACACGCATCA 30433 Query 70109 ACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 |||| |||||||| ||||| || | | || ||||| || | ||||| || || | Sbjct 30434 ACATCTGCTGAGGACGTTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCAA 30493 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 | ||||| || || || || |||| || |||| | ||||| | ||| | || || | Sbjct 30494 GCGTTTTGAAGCCGAAGAAGGTGTACGAGTAGTCGCGGTCGTAGACAATCGCTGAGTTGA 30553 Query 70229 GTTT 70232 |||| Sbjct 30554 GTTT 30557 >seq17418 Length=39954 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 39652 AATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATAT 39711 ||| | |||||||||| ||||| || ||||| || ||||||||||| |||||||| || Sbjct 733 AATCAGTTCGTTAGAATGAGTGAGCCCTGGCATGAGCCCACGCTTTTTAAGCCAAAAAAT 792 Query 39712 GGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 || || ||||||||| ||| ||||| ||||| || || || || || | ||||||||| Sbjct 793 GGAGGCGAAAGATCCACTAAAAAAGATTCCTTCGACAGCAGCGAACGCGATAAGTCTCTC 852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686747230463880