Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq17996 156 3e-33 seq17418 82.4 6e-11 >seq17996 Length=68186 Score = 156 bits (172), Expect = 3e-33 Identities = 361/536 (67%), Gaps = 10/536 (2%) Strand=Plus/Plus Query 19260 AGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCAT 19319 ||| ||||| | || || ||| | || || | ||| || || ||| | |||| |||| Sbjct 11990 AGAATTTTCGCACATTTTCCGTCGTGCTTTCGCGTCTCGCGTCTTTCCACCAGAGTTCAT 12049 Query 19320 TAAACAA-TTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTG 19378 | ||||| |||| ||| ||||| || | ||| | | || ||||| ||||| || | Sbjct 12050 TGAACAACTTGGCATG-AAACACGTCAGAGGAATGCTTCTCTATGGACCACCCGGAACCG 12108 Query 19379 GAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTG 19438 |||||||| | || || ||| | || | || | | | || || ||||||| Sbjct 12109 GAAAAACACTTATGGCTAGACAGATTGGAAAGATGTTGAATGCACGTGAGCCGAAAATTG 12168 Query 19439 TAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTT 19498 |||| ||||| |||| || | || || || || |||| || |||||| ||| Sbjct 12169 TAAACGGTCCGCAAATTTTGGACAAGTACGTTGGAGAATCCGAGTCAAATGTGCGAAAGC 12228 Query 19499 TGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTA 19558 |||||||||| || || || || | ||| | || ||| | | | || || | Sbjct 12229 TGTTTGCTGATGCCGAGGAGGAGTGGAGACGCTGTGGAGCCAATTCTGGTCTTCATATCA 12288 Query 19559 TAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGG-TGTAAA---TG 19612 | || | || ||| | ||||| ||||| ||||| ||||| || ||| || || | Sbjct 12289 TTATCTTCGACGAAATCGACGCCATCTGCAAGCAGAGAGGATCAATGGCTGGAAGCTCTT 12348 Query 19613 GAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGA 19672 ||| || |||||||||||||||||| | || ||||| | ||||| ||| | || || | Sbjct 12349 CAGTTCACGACACTGTTGTCAATCAATTGCTCTCAAAGATGGACGGAGTTGAACAGCTCA 12408 Query 19673 ATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC-AGCGCCTTATTA 19731 |||| ||| | |||||||| ||||| ||| ||| || | || ||| || ||| || Sbjct 12409 ATAACATTCTTGTTATTGGAATGACCAATCGACGTGACATGATTGACGAGGCTCTTCTT- 12467 Query 19732 CGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACG 19787 || ||||| || |||||| | | || ||| || ||| || || || | |||||| Sbjct 12468 CGTCCCGGACGATTGGAAGTGCAAATGGAAGTTTCCTTGCCAGACGAGTTTGGACG 12523 >seq17418 Length=39954 Score = 82.4 bits (90), Expect = 6e-11 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 44345 GAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGA 44404 || ||||| ||||| ||||| ||||| | || ||| | || || | | || ||| Sbjct 592 GACGCAGTCAAGATCGAACAGGAATTCCTTACCGAAGCGCTGCCAGTCGACATGATTGGA 533 Query 44405 ATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA 44464 ||||| | | | ||| ||| || ||||| | | || |||| | | ||| | ||| Sbjct 532 ATGAACTGTCGTCTCATGTCCCAGTACATTGAGTTTGTCGCCGATCATCTGCTTGTTGAA 473 Query 44465 CTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCG 44524 || || || || || | || | |||| ||||| || || ||||| ||||| ||| Sbjct 472 CTCGGATGTGAAAAGCTGTACAAGAAGAAAAATCCGTTCGACTTCATGGAGAATATCTCG 413 Query 44525 TTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTC 44584 | || || || ||||||||||| || || |||||| || |||||||| || ||| Sbjct 412 ATTGATGGAAAGACAAACTTTTTCGAGAAGCGCGTTTCGGAGTATCAGCGTCCCGGAGTC 353 Query 44585 ATG 44587 ||| Sbjct 352 ATG 350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397364850546085