Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq17868 98.7 8e-16 seq18085 89.7 4e-13 >seq17868 Length=20976 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| || ||||||||| | | | || | || |||||||| || || Sbjct 8319 GTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCA 8260 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | |||||| ||||| || || | ||||| || || ||||||| || Sbjct 8259 GCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTG 8200 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||||| | ||||| || || || || |||| ||| || || | ||| Sbjct 8199 ACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAGGGTGATAGTTTTTCCAGTTAAAGTC 8140 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 8139 TTGACGAAGATTTGCAT 8123 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||| |||||||| || | |||| | ||||| | || || ||| Sbjct 7084 GTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTGCGACCATCTTCCAATTGCTTTCCG 7025 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || | ||||| || || || | |||||||| || ||| ||| ||| Sbjct 7024 GCGAAGATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATTTTGGCTTTG 6965 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||| | ||| || || || || || || | || || |||| ||| Sbjct 6964 ACATTTTCGATAGTGTCGGAGGCCTCGACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTC 6905 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 6904 TTGACAAAGATTTGCAT 6888 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | |||| |||| ||||||||||| ||| Sbjct 7588 GTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGTTTTCCG 7529 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || | || ||||| || || | || || || || ||||||| || Sbjct 7528 GCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 7469 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||| | |||||| || || || || || | || || |||| ||| Sbjct 7468 ACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTC 7409 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| |||||||| Sbjct 7408 TTCACAAAAATTTGCAT 7392 >seq18085 Length=168442 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 130397 GCGCCACTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAA 130456 ||||| || || ||||| ||||| |||| || ||| ||||||||| ||||||||||| Sbjct 27151 GCGCCGCT-TTGTCGACAGTGAACTGAACAGCGTTGACGGCCGGCTTCGTGCGCAAATAG 27209 Query 130457 TACATGCCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG 130516 ||||| || || |||||||| | || ||| ||| ||| || | || || | Sbjct 27210 TACATTCCCGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATCGAGGTGATGGTGGCG 27269 Query 130517 TAATTGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTG 130576 || | || | |||| ||||| | ||| |||||||||||||| | || || | | Sbjct 27270 TAGCTAGGCTTGGCCATATGAATGTTCAACGACTGCGATTGATCAATGTAGGCTCCACGG 27329 Query 130577 TCTGCAGCCATGTCGA 130592 || || ||||| |||| Sbjct 27330 TCCGCCGCCATCTCGA 27345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424836948864504