Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq18085 109 2e-18 seq17418 86.0 2e-11 >seq18085 Length=168442 Score = 109 bits (120), Expect = 2e-18 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037 || || ||| | || || | ||||||| ||||| ||||||||||| || ||| ||| Sbjct 30128 ATTCCGATGCTTCGCGTCTACAACAACACTGCTCGTTACGTCGATCAGGGTGGCAACAAG 30069 Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATT 255085 ||||| ||||||||| |||||||||||||||||||||||||||| ||| Sbjct 30068 CGCCCGGGAGCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGATATT 30021 >seq17418 Length=39954 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 443680 TCGAACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGAC 443739 ||| || ||||| ||| || | |||| |||| |||| || |||| ||||||||| Sbjct 876 TCGGACAAGAAAGCGTCA--TTTGCCGAGAGACTTATCGCGTTCGCTGCTGTCGAAGGAA 819 Query 443740 TGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCAC 443799 | || ||||| || | |||| |||||||| || ||| | ||||||||||| || |||| Sbjct 818 TCTTTTTTAGTGG-ATCTTTCGCCTCCATTTTTTGGCTTAAAAAGCGTGGGCTCATGCCA 760 Query 443800 GGTCTGACCTTTAGTAACGAACTGAT 443825 || || || | |||||||||||| Sbjct 759 GGGCTCACTCATTCTAACGAACTGAT 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587953063606565