Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq17815 102 1e-16 >seq17815 Length=64061 Score = 102 bits (112), Expect = 1e-16 Identities = 127/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 182697 TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACC 182756 || || |||||||||||||| ||||| | |||||||| || |||| ||||| | ||| Sbjct 23420 TTTCCACGAAGTGGGAACACTCCGTACTTGTCACGACCGACCACAGCCAGACCAGATACC 23479 Query 182757 GCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACT--TTCCAGATTGTG 182814 || || || || |||||||| ||||| |||| ||||| || |||| | | || || | Sbjct 23480 GCCAGTGTCTTGGCCGAATCTCCCTCAGTGAGGATGAGCGTGCACTGCTGCGAGTTTTT- 23538 Query 182815 CCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACCGGTAATTTTGGA 182866 || || || | ||| ||||| |||| ||| ||||| || | | |||||| Sbjct 23539 -AGTTCCAGCGTCGTTGGCGTCCTCCAGCTTCGGAATTCCCTTCAGTTTGGA 23589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627884279023200