Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq18085 185 1e-41 >seq18085 Length=168442 Score = 185 bits (204), Expect = 1e-41 Identities = 385/569 (68%), Gaps = 6/569 (1%) Strand=Plus/Plus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || || ||||||||| ||||||||||| ||| |||| ||||| || || | | Sbjct 29869 AGCCCTGGGCACTCGCACGGGCACATCAAAGACCAATCCTGATCCTTTTCGACACGTTTC 29928 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 ||||| | || || | ||| || ||| || || || || |||| ||| ||| Sbjct 29929 ATGAACAAATCTGGCACCCAGAGTGCCAGAAACAGATCACGAGCACGCTCCTCTTCGGGT 29988 Query 79444 CCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 || ||| || || | ||| || | || |||||||||||||||||||| ||| Sbjct 29989 CCAGTGTTTTTGCGGAGTGAAACAAACTCGAAAATATCGGCGTGCCACGGCTCCAGGTAG 30048 Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563 |||||||||| ||| ||||||| ||| ||||| | |||||| || || ||||||||| Sbjct 30049 ATGGCGAACGCTCCCGGGCGCTTGTTGCCACCCTGATCGACGTAACGAGCAGTGTTGTTG 30108 Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACG--CCGTTCGTCCCGTTGATTCGTG 79621 | || || ||||| || | | |||| ||||| ||||| || || || | Sbjct 30109 TAGACGCGAAGCATCGGAATCAGTCCGT--TCGACGTTCCGTTGGTGCCAGCAATCACCG 30166 Query 79622 TACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATG 79680 ||| | || ||||| || | ||| || || ||||| || || | | ||| || || Sbjct 30167 ATCCGGTGGCACGAATCTT-GTGCACGTTGAGACCGATTCCACCTGCGCTCTTCGATATA 30225 Query 79681 TGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACC 79740 | ||||| | || ||||| || ||||| ||| |||||||| || |||| | || | Sbjct 30226 AGGGCGCATTGTTTTAGCGTGTCATAGATTCCCAGAATCGAGTCATCACTCATCGTGAGC 30285 Query 79741 AGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 |||||||| |||||| ||||| | || || | |||||| || || || | ||| Sbjct 30286 AGGAAGCACGACGACATTTGTGGCCGGCATGTTCCAGAGTTGAAAAGAGTTGGAGAGGCG 30345 Query 79801 TGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCG 79860 ||||| | |||| || ||||| || |||||| || || | | || || || Sbjct 30346 TGCGTCATGAACCGTTCCGACATCAAATTGTACGTTTCGATGGCTGAAGCGATATCTTCT 30405 Query 79861 CCGTGGATGCCGACCGCGACGCGCATGAA 79889 ||||| || |||| ||||| ||||| || Sbjct 30406 CCGTGTATTCCGATGGCGACACGCATCAA 30434 Score = 156 bits (172), Expect = 5e-33 Identities = 298/433 (69%), Gaps = 7/433 (2%) Strand=Plus/Plus Query 78784 AGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCG 78843 || ||||| ||||| | |||| ||||||| |||||| || || | |||| | | | Sbjct 28933 AGAGCCGCATGGTAGATCACCTCAAAGATGCGCTTGTTAAGATCTCTGGCCTGTGGCGAG 28992 Query 78844 TCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATC 78903 ||||| | || | | ||||||| |||||| || ||||| ||||||| | ||| Sbjct 28993 GTGAACGGATAGCGCATGAGCATGAAGCAATCGGCGAGACCCTGAACGCCGAGTCCAATC 29052 Query 78904 GGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATG 78963 || || || |||||||| || || ||| ||||| ||| || ||||| |||||| Sbjct 29053 GGGCGATGACGCATGTTCGAGTTGCGAGCCTCCTCGACCGGATAGTAGTTCACGTCGATG 29112 Query 78964 ACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAA 79023 | ||||||||| || |||| || ||||| ||| | || | || ||||| Sbjct 29113 ATCTTGTTCAGGTTGCGAGTGATCACTTTTGTCACTTCGGCGAGCTTCACAAAGTCAAAC 29172 Query 79024 TGATTTCCTTTGATGA-AAGTCGGT---AGGCACAGCGATGCCAGGTTGCACACGGCCGT 79079 | || | | | ||| || |||| | ||| | || || || ||||| || || | Sbjct 29173 TTCTTCTCGTGGGTGACAAACCGGTTCAACGCA-ATAGAGGCAAGATTGCAGACAGCGAT 29231 Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||| ||||| ||| ||| ||||| || ||||||||||| || | |||||||| || Sbjct 29232 CTCATCCGGAGCAGAGTACTCTATGATCTCGGTGCACAAATTCGAGCATTTGATGGTTCC 29291 Query 79140 GATGTTCTTCTGG-TTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCC 79198 | ||||| |||| ||| | |||| |||| ||||||| |||||| ||||| || | Sbjct 29292 AAGGTTCTGCTGGTTTGATTTTCT-GTTAGAGGCGTCTTTGTAGGTTATGTAGGGAAGTC 29350 Query 79199 CGGTCTCAACCTG 79211 ||||||||| ||| Sbjct 29351 CGGTCTCAATCTG 29363 Score = 129 bits (142), Expect = 6e-25 Identities = 308/457 (67%), Gaps = 13/457 (3%) Strand=Plus/Minus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 ||||| | |||||| | ||| | || || |||||||| || || || |||||||| Sbjct 27649 CACGGAATCCGCAACAGTCTTCTCATGGCTCCAATGCCGACGGCTTCCACTGCCCAGATA 27590 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTG 20485 | || ||||| ||| | ||||||||||||| | |||||||||| |||||| || Sbjct 27589 CTCGGAAACAATGAGTCGATCGAGCCGTACACCTCAAACATCTACTCTCGTCGTGTGCTC 27530 Query 20486 GCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGA-TCGATAT 20544 ||||||| ||| || || ||| ||| || || |||||| | || | ||| | Sbjct 27529 TCCGGTGACTTCCAGATTGTCAACCCACACATGCTCAAGGACTTGGTGGAGCGTGGAT-T 27471 Query 20545 GTGGTCGCCCAAAATTAAGAA---TGAAATTGTCCGAGCCGGCGGGAGCGTCCAGG-CAT 20600 |||| | || ||||| | |||| || | | ||| | || | | ||| Sbjct 27470 GTGGAACGATGAGATGAAGAACCGTCTGATTG-CCAA--CAACGGATCCATCAAAGACAT 27414 Query 20601 TG---GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGA 20657 || || ||| | || | || |||| | ||| | || || ||||| || ||||| | Sbjct 27413 TGAGGGAATTCCGACCGATC-TCCAGGAGCTGTACCGCACTGTGTGGGAGATTCCACAAA 27355 Query 20658 AGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCA 20717 || || ||||| |||||||| || || || |||||||| || || || |||||| | | Sbjct 27354 AGGAGATTATCGAGATGGCGGCGGACCGTGGAGCCTACATTGATCAATCGCAGTCGTTGA 27295 Query 20718 ATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGC 20777 | | |||| || || ||| || | | | ||| ||||| | ||||| ||| Sbjct 27294 ACATTCATATGGCCAAGCCTAGCTACGCCACCATCACCTCGATGCACTTTTACGGATGGA 27235 Query 20778 ACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGAC 20814 | ||||| ||||||||||| ||||||||| |||| || Sbjct 27234 AGAAGGGACTCAAGACGGGAATGTACTATTTGCGCAC 27198 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||||||||||||| ||||||||||| ||||||||||||||||| | |||||| Sbjct 27198 GTGCGCAAATAGTACATTCCCGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATCGAG 27257 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| || || || |||| ||||| | |||||| || || || ||| Sbjct 27258 GTGATGGTGGCGTAGCTAGGCTTGGCCATATGAATGTTCAACGACTGCGATTGATCAATG 27317 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 || || || ||||| |||||||| ||||| | | |||||| ||||||||||| | || Sbjct 27318 TAGGCTCCACGGTCCGCCGCCATCTCGATAATCTCCTTTTGTGGAATCTCCCACACAGTG 27377 Query 78370 CGGTA 78374 ||||| Sbjct 27378 CGGTA 27382 Score = 125 bits (138), Expect = 8e-24 Identities = 379/581 (65%), Gaps = 6/581 (1%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| | | || ||||| ||||| |||| || || || || || || | || | Sbjct 30446 CCTCAGCAGATGTTGATGCGTGTCGCCATCGGAATACACGGAGAAGATATCGCTTCAGCC 30387 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAA--GTTCTTCACGCACGCGACGCCGACCCTTT 19220 ||| || ||| | ||||| | ||| |||| | |||||||| | || || |||| Sbjct 30386 ATCGAAACGTACAATTTGATGT--CGGAACGGTTCATGACGCACGCCTCTCCAACTCTTT 30329 Query 19221 TCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATG 19280 ||||| | || || | || || |||||| || ||||| | | |||| |||| Sbjct 30328 TCAACTCTGGAACATGCCGGCCACAAATGTCGTCGTGCTTCCTGCTCACGATGAGTGATG 30269 Query 19281 ACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCG 19340 || ||| ||| ||||| || ||||| || | ||||| | || || ||| | | | Sbjct 30268 ACTCGATTCTGGGAATCTATGACACGCTAAAACAATGCGCCCTTATATCGAAGAGCGCAG 30209 Query 19341 GGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACG 19399 | || ||||| || || ||| | || || || | | || | || ||| || Sbjct 30208 GTGGAATCGGTCTCAACGTGCAC-AAGATTCGTGCCACCGGATCGGTGATTGCTGGCACC 30150 Query 19400 AACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459 |||||| | |||| | | || ||||| ||||||| ||||||||| || | ||| Sbjct 30149 AACGGAACGTCGAACGGACTGATTCCGATGCTTCGCGTCTACAACAACACTGCTCGTTAC 30090 Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519 ||| | ||||| ||| ||| ||| ||| |||||||||||||||| ||||| |||||| Sbjct 30089 GTCGATCAGGGTGGCAACAAGCGCCCGGGAGCGTTCGCCATCTACCTGGAGCCGTGGCAC 30030 Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGT 19579 || || | | || || | ||| ||| ||| || ||| ||| ||| | Sbjct 30029 GCCGATATTTTCGAGTTTGTTTCACTCCGCAAAAACACTGGACCCGAAGAGGAGCGTGCT 29970 Query 19580 CGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGAC 19639 || || || || ||| | ||| | || || | |||||| | || || ||||| Sbjct 29969 CGTGATCTGTTTCTGGCACTCTGGGTGCCAGATTTGTTCATGAAACGTGTCGAAAAGGAT 29910 Query 19640 GAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 | || ||| ||||||||||| ||| ||||| || || Sbjct 29909 CAGGATTGGTCTTTGATGTGCCCGTGCGAGTGCCCAGGGCT 29869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548395780110480