Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq18085 221 1e-52 seq17815 102 9e-17 >seq18085 Length=168442 Score = 221 bits (244), Expect = 1e-52 Identities = 409/585 (70%), Gaps = 14/585 (2%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGT- 53238 |||||| | | || ||||| |||||| | || || ||||| || || || ||| | Sbjct 30446 CCTCAGCAGATGTTGATGCGTGTCGCCATCGGAATACACGGAGAAGA-TAT-CGCTTCAG 30389 Query 53239 CCGT-GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGT 53297 || | || |||||| | || ||| || || | | ||||||||| | ||||| || | Sbjct 30388 CCATCGAAACGTACAATTTGATGTCGGAACGGTTCATGACGCACGCCTCTCCAACTCTTT 30329 Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357 ||||| |||| || | || || |||||| ||||||||| | |||||| |||| Sbjct 30328 TCAACTCTGGAACATGCCGGCCACAAATGTCGTCGTGCTTCCTGCTCACGATGAGTGATG 30269 Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417 ||||||| || ||||| || ||||| || | || |||| || || ||| | | | Sbjct 30268 ACTCGATTCTGGGAATCTATGACACGCTAAAACAATGCGCCCTTATATCGAAGAGCGCAG 30209 Query 53418 GTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACG 53476 |||| |||||| || || ||| | || | ||||| | ||| | || || || Sbjct 30208 GTGGAATCGGTCTCAACGTGCAC-AAGATTCGTGCCACCGGATCGGTGATTGCTGGCACC 30150 Query 53477 AACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGT 53534 ||||| ||||| | ||| | | || ||||| ||||||| ||||||||| || || | Sbjct 30149 AACGGAACGTCGA--ACGGACTGATTCCGATGCTTCGCGTCTACAACAACACTGCTCGTT 30092 Query 53535 ACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGC 53594 ||||| | |||||||| |||||| ||| |||||||||||||||| |||||||||| Sbjct 30091 ACGTCGATCAGGGTGGCAACAAGCGCCCGGGAGCGTTCGCCATCTACCTGGAGCCGTGGC 30032 Query 53595 ACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCA-GGGTGACGAAGAGATGCGC 53653 ||||||| ||| | |||||| | || || | || || || ||||||| ||| Sbjct 30031 ACGCCGATATTTTCGAGTTTGTTTCACTCCG-CAAAAACACTGGACCCGAAGAGGAGCG- 29974 Query 53654 TGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 ||| ||||| |||||| || || ||| | || || | |||||| || || || || Sbjct 29973 TGCTCGTGATCTGTTTCTGGCACTCTGGGTGCCAGATTTGTTCATGAAACGTGTCGAAAA 29914 Query 53713 GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 ||| |||| |||| ||||||||||| ||||||||| || || Sbjct 29913 GGATCAGGATTGGTCTTTGATGTGCCCGTGCGAGTGCCCAGGGCT 29869 Score = 159 bits (176), Expect = 4e-34 Identities = 305/445 (69%), Gaps = 7/445 (2%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| || ||| |||| |||||||| || || || || || ||||| | || ||| Sbjct 27640 CGCAACAGTCTTCTCATGGCTCCAATGCCGACGGCTTCCACTGCCCAGATACTCGGAAAC 27581 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || ||| || ||||||||||||| | ||||||||| || || || | ||||| Sbjct 27580 AATGAGTCGATCGAGCCGTACACCTCAAACATCTACTCTCGTCGTGTGCTCTCCGGTGAC 27521 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| ||| | |||||||| || | || ||||||| Sbjct 27520 TTCCAGATTGTCAACCCACACATGCTCAAGGACTTGGTGGAGCGTGGATTGTGGAACGAT 27461 Query 55664 CAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG---ATTC 55718 |||| |||| || | | ||| ||| || ||| || | | | ||| |||| Sbjct 27460 GAGATGAAGAACCGTCTGAT-TGCC-AACAACGGATCCATCAAAGACATTGAGGGAATTC 27403 Query 55719 CTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG 55778 | |||| ||||| | ||||| || ||||||||||||||||| ||| | || | Sbjct 27402 CGACCGATCTCCAGGAGCTGTACCGCACTGTGTGGGAGATTCCACAAAAGGAGATTATCG 27343 Query 55779 ACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGG 55838 | ||| || || ||||| || ||||| || || || ||||| ||||||| |||| Sbjct 27342 AGATGGCGGCGGACCGTGGAGCCTACATTGATCAATCGCAGTCGTTGAACATTCATATGG 27283 Query 55839 AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 || ||| |||| | | |||||||||||||||||| |||||||||||||||| Sbjct 27282 CCAAGCCTAGCTACGCCACCATCACCTCGATGCACTTTTACGGATGGAAGAAGGGACTCA 27223 Query 55899 AGACGGGTATGTACTATCTGCGGAC 55923 ||||||| ||||||||| |||| || Sbjct 27222 AGACGGGAATGTACTATTTGCGCAC 27198 >seq17815 Length=64061 Score = 102 bits (112), Expect = 9e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||| | |||| ||| || ||||| |||||| |||||||||||| Sbjct 22463 GTGAAAATGTAACGTGCCGAAGCAGAATCTTTTCCACCTTGAAGACGAGTACCGAATTGT 22522 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| ||||| || | || | |||||| | ||| ||||| | || |||||||||||| Sbjct 22523 CCAATCGGCAGCAGCAAATTGATGTTGTTAGAGCCAACAAAATCCTGCGCCAAGTTGACA 22582 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || || | ||||||||| || || || | |||| || || || Sbjct 22583 ATAGTGCCCATAAGCGACTGCTCACCATGATGGTAGGCAGAGAGCTCGGCGACAGCTCCA 22642 Query 117485 GCCAGCTGAGCCACCTTCA 117503 |||||||| || || |||| Sbjct 22643 GCCAGCTGGGCAACTTTCA 22661 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 118148 TTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGA 118207 ||||| | ||| ||||| ||| | |||| |||||||| || |||| || || ||||| Sbjct 23375 TTTTCAGCCACTTGTTTCATGTTTCCGTCACGAACGTTCAGCAGCTTTCCACGAAGTGGG 23434 Query 118208 AACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCC 118267 ||||| || |||||||||| || || || || || | | || || | ||| ||| Sbjct 23435 AACACTCCGTACTTGTCACGACCGACCACAGCCAGACCAGATACCGCCAGTGTCTTGGCC 23494 Query 118268 GAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGA----TGAGTACCGGCCCA 118323 || || ||||| || | || || ||||||| ||||||| | ||| || || Sbjct 23495 GAATCTCCCTCAGTGAGGATGAGCGTGCACT----GCTGCGAGTTTTTAGTTCCAGCGTC 23550 Query 118324 ATTAGCATCATCCAGCTTCGGAA 118346 || || || ||||||||||||| Sbjct 23551 GTTGGCGTCCTCCAGCTTCGGAA 23573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547087287956600