Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq17868 111 1e-19 >seq17868 Length=20976 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | ||||| || || ||| ||||||||||| || || || || Sbjct 6658 CCTCCTCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGAC 6599 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| || || || |||||||| || | | || ||||| || || Sbjct 6598 AATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGG 6539 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| ||||| ||| ||| | ||||||||| | || || Sbjct 6538 ATTCCTTCCTTGTCT-TGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGAC 6480 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| || ||||| || || || || || |||||||| Sbjct 6479 TTCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 6432 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||| | |||||||| |||||| || ||||||||||| || Sbjct 6202 CCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAG 6143 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || ||||| || || | | || || || || || Sbjct 6142 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAGGA 6083 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| |||||||| |||| || | ||||| | || ||||| | ||| || Sbjct 6082 ATTCCTTCCTTGTCCTGGATC-TTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAAC 6024 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| |||||||| ||||| || ||||| || ||||| ||||| Sbjct 6023 CTCGAGGGTGATCGTTTTTCCGGTCAAAGTTTTGACGAAAATTTGCAT 5976 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | |||||| || ||||||||||||||| || || || Sbjct 7114 CCTCCTCGGAGACGGAGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGAC 7055 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| || ||||| || || | | |||||||| || || Sbjct 7054 AGGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGG 6995 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| |||||| ||| ||| | ||| || | || ||||| | ||| || Sbjct 6994 ATTCCCTCTTTGTCTTGGAT-TTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGAC 6936 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || ||||| || || || ||||| || ||||| Sbjct 6935 CTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 6888 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| || ||||| || || || || || || | || ||||| ||| Sbjct 7822 TGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCAAGCTGT 7763 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | | ||| ||||| ||||| | |||||||||||| |||||| Sbjct 7762 TTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGGATCTTG 7703 Query 34624 TGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 || | | |||||||| | || ||||| | ||| || || || ||||| Sbjct 7702 GCCTTCACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATGGTCTTTCCGGTG 7643 Query 34684 AACGTTTTCACAAAAATCTGCAT 34706 | || ||||| || |||||||| Sbjct 7642 AGGGTCTTCACGAAGATCTGCAT 7620 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536 || || || | |||||| | ||| | || |||||| || ||||| ||||| || || Sbjct 8352 TCTCCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCG 8293 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 || || || || | || || || || || || || || || |||||||| || || || Sbjct 8292 GAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGG 8233 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCT 34654 || | ||||||||||||| |||| || | || ||| | || ||||| ||| | Sbjct 8232 GGAATTCCCTCCTTGTCTTGGATC-TTGGCCTTGACGTTTTCGATGGTGTCGGATGCT-T 8175 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||| || ||||| || ||||| || || || || || ||||| Sbjct 8174 CGACCTCAAGGGTGATAGTTTTTCCAGTTAAAGTCTTGACGAAGATTTGCAT 8123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314657422372361