Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq17868 145 7e-30 >seq17868 Length=20976 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| ||||||| ||| | || || ||||| || || | ||| Sbjct 6888 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAGGCCTCC 6947 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| ||||| ||||||||||| || || ||||| || ||| Sbjct 6948 GACACTATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAGGGAATCCCACCAGACCAA 7007 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| || ||||||||||| || ||| | || || |||||| Sbjct 7008 CAAAGACTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCCTGTCGGACTACAAC 7067 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||||| | ||| | ||| | ||| | || || || || Sbjct 7068 ATTCAAAAGGAGTCGACACTCCATCTCGTTCTCCGTCTCCGAGGAGGTAT 7117 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||| ||| | || || | ||||| ||| | ||| Sbjct 6432 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACATTGGAAGTCGAAGCCTCC 6491 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| ||||||||||||||| ||||| || ||||| || || Sbjct 6492 GACACAATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 6551 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||| || || ||||||| | || | ||||| ||||| Sbjct 6552 CAAAGACTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGCACATTGTCCGACTACAAT 6611 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||||||||| || || | || |||||| Sbjct 6612 ATTCAAAAGGAATCCACACTTCACTTGGTT 6641 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || || || || | ||| Sbjct 6204 ATGCAGATCTTCGTGAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTTGAGGCCTCC 6263 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||||||||| || ||||| ||||| Sbjct 6264 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCACCAGATCAG 6323 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | || | ||||| |||||| Sbjct 6324 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAAC 6383 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 6384 ATCCAGAAGGAGTCGAC 6400 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| ||| | || || |||||||| ||| | ||| Sbjct 7620 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAAGTCGAAGCCTCC 7679 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || |||||||| || || || || || || || Sbjct 7680 GACACAATCGAAAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCGCCAGACCAG 7739 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| ||||| | || || | || | || || |||||| Sbjct 7740 CAGAGACTTATTTTCGCCGGAAAACAGCTTGAGGATGGCCGCACGCTCTCTGACTACAAC 7799 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || | ||| | ||| | || || || || Sbjct 7800 ATCCAGAAGGAGTCGACACTCCACCTTGTTCTCCGTCTCCGTGGAGGTAT 7849 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| ||| | || || ||||| || || | ||| Sbjct 7848 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAGGCATCC 7907 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || |||||||||||||| || || ||||| || || Sbjct 7908 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 7967 Query 27108 CAG 27110 ||| Sbjct 7968 CAG 7970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434816101755840