Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq3 105 2e-18 >seq3 Length=60809 Score = 105 bits (116), Expect = 2e-18 Identities = 440/683 (64%), Gaps = 70/683 (10%) Strand=Plus/Plus Query 49843 AAGCCGCCGAAAGGCCCGGAGTGGGGCTTTGAGGTGAAGTGGGACGGGTATCGGCTTGCC 49902 |||||||| ||||| || ||||||| |||||||| |||||||| || ||||| | Sbjct 59185 AAGCCGCCTGTCGGCCCCGAATGGGGCTGGGAGGTGAAATGGGACGGCTACCGGCTGACG 59244 Query 49903 GTTCATGTCGAGCCAGGCGAGGTGAGGGCGATCACCCGCGGCGGCTACGACTGGACCAA- 49961 | | ||| ||| | ||| | | | || |||||||||||||| ||| | | Sbjct 59245 GCCTACATCGGGCCGAATGGCGTGCGATTGCTTACGCGCGGCGGCTACGATTGGGCAAGC 59304 Query 49962 -GAAGTTCGGCTTGATCGTCGCCGAGGCGCGCGAGCTCGGGCACGCCTCCATGATCCTGG 50020 || | | || || || | || |||| |||||||| || | |||||||||| Sbjct 59305 CGATTTCCAGCA--ATTACTGCAGCTGCTCGCGCGCTCGGGCCAGCGACGATGATCCTGG 59362 Query 50021 ATGGCGAGGCCGTCGTACTCGACGAGCAGGGCCGATCGGATTTCGGGCTGCTGCAG---- 50076 | |||||||| ||| | ||||| |||||||| || |||||||| ||| |||||| Sbjct 59363 ACGGCGAGGCGGTCATTCTCGATGAGCAGGGACGCTCGGATTTTGGGGCTCTGCAGAAGT 59422 Query 50077 -----CGCGCCGTCGGCAGGCGTCC---GAGCCTGCA---CGATGCCGGGGAGATCATCT 50125 ||||||||||| | ||| | ||||||||| | ||| | | ||| ||| Sbjct 59423 CGCTCGGCGCCGTCGGCCGTCGTTCGGGGAGCCTGCAGTCGGGTGCGGTGCTGATGGTCT 59482 Query 50126 TTTATGCCTTCGATCTACTCTATCTCGATGGCCAAGACCT--------TCGAATGCATCC 50177 || || || || ||| |||||||||| || || |||||| || Sbjct 59483 TT---------GACCTGCTGTATTTCGATGGCCACGATCTGAGGGGCGTCGAATACA--- 59530 Query 50178 GCTGTCCGAGCGCCGGCGGCTGCTCGAACCGATCGC---CGCCGG-CAGGACTGGCGCGA 50233 | |||||||| |||||||| ||| || | ||| | |||| || |||| Sbjct 59531 -----GCACGCGCCGGCATTTGCTCGAA--GAT-GCTTTAGACGGCCTGGAC-GGTGCGA 59581 Query 50234 TCCGCTTCTCGGAGGAGGTGCATGCCGACGGCGCCGAG-TTCTTCAAGATC--GCTTGCG 50290 || | | |||||||| | || | |||| | | | | ||| | || | || || Sbjct 59582 TCAGGGTTTCGGAGGAAATCGATACTGACGCCCCGGCGACTCTGCTGGACCATGCCTGTC 59641 Query 50291 AGATGGGGCTCGAAGGCATCATCGCGAAGCGGCGGGACGCGCCGTATCGATCGGGCCG-- 50348 | ||||| || |||||| | | ||||| || || |||| || | || |||| Sbjct 59642 GTCTCGGGCTGGAGGGCATCGTGGGCAAGCGCCGCGA-TAGCCG-AT--ACCGCGCCGGG 59697 Query 50349 ----CCGTCCGGAATGGCTGAAGATCAAATGCGCGCGCCGCGACACCTTCGTGATCATCG 50404 ||| | || ||| | ||| ||| |||| | |||| | ||||||||| | | Sbjct 59698 AAAACCGGC--GATTGGGTCAAGTGCAAGTGCGTCCAGAGCGAAGCATTCGTGATCGTGG 59755 Query 50405 GATATGAGCCGTCGACGATCCCCGGCGCTATCGGCCGGCTGCTCCTGGCTGCCAAGAAGG 50464 | | ||||||||| || | ||||| ||| | |||| | || || || | |||| Sbjct 59756 GCTTTGAGCCGTCTGCGGT---GGGCGCGATCCGGTCGCTGATGCTCGCCGCGTACAAGG 59812 Query 50465 GTGAAGGCCTCGTCTACGTAGGC 50487 |||| ||||| ||||| || ||| Sbjct 59813 GTGACGGCCTGGTCTATGTCGGC 59835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162488483528706