Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq17868 188 2e-42 seq17886 91.5 3e-13 >seq17868 Length=20976 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| ||||| ||||| || |||||||||||||| | ||||| | ||||| Sbjct 6187 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAGAGGGTGCGACCATCC 6128 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || | ||| || || ||||||| ||||||||||||| Sbjct 6127 TCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTGTCC 6068 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || |||||||||||||| ||| ||||||||||| |||||||| Sbjct 6067 TGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTGATCGTT 6008 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | ||| || || || | ||||| Sbjct 6007 TTTCCGGTCAAAGTTTTGACGAAAATTTGCAT 5976 Score = 181 bits (200), Expect = 2e-40 Identities = 172/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||||| || || ||||| || || ||||| || |||||||| || || | || || | Sbjct 6422 AAGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCG 6363 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || || || ||||||||||| |||||||||||||| || || || || |||| |||||| Sbjct 6362 GCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCCTTC 6303 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||||||||||| || || ||||| |||||||| ||| ||||||||||| || Sbjct 6302 TTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGT 6243 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| |||||||| ||||| ||||| || || | ||||||| Sbjct 6242 GATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCATT 6203 Score = 178 bits (196), Expect = 3e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||| |||||||| ||||||||||| |||| ||||| | ||||| Sbjct 6871 AGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCGAGAGGGTGCGACCATCC 6812 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || | || ||||| || || | ||||||||||||| Sbjct 6811 TCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCC 6752 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||||||||| ||||| || ||||| || | |||||| ||| Sbjct 6751 TGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAACTTCCAAAGTGATAGTC 6692 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| ||||| ||||| || || | |||||| Sbjct 6691 TTTCCAGTGAGGGTCTTCACGAAAATTTGCATT 6659 Score = 178 bits (196), Expect = 3e-39 Identities = 175/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || ||||||||||||||||| |||||||||||||| || || | || Sbjct 8347 TCCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAG 8288 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || |||||||| || |||||||| | || || || || || |||| Sbjct 8287 GGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAAT 8228 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| |||||||| |||||||| || ||||||||||||||||| || ||| ||||| Sbjct 8227 TCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACCTC 8168 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| || | |||||| || || | |||||| Sbjct 8167 AAGGGTGATAGTTTTTCCAGTTAAAGTCTTGACGAAGATTTGCATT 8122 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| ||||| ||||| || |||||||| || || | || || | || || Sbjct 7603 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCC 7544 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || |||||||| || | ||| || || || || | ||||||||||||| Sbjct 7543 TCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCC 7484 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || |||||||||||||| ||| ||| ||||| || ||||| ||| Sbjct 7483 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTC 7424 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || | |||||| ||||| | |||||| Sbjct 7423 TTTCCGGTCAAAGTCTTCACAAAAATTTGCATT 7391 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||| || ||||| || || || || | | || | ||||||| Sbjct 6643 AGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTGCGTCCATCT 6584 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | ||| ||||| || || | |||||||||||| Sbjct 6583 TCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 6524 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || ||| ||||||||| || || ||||| ||| ||| || || | ||||||||| Sbjct 6523 TGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAATGTGATCGTC 6464 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || | |||||| || || | ||||||| Sbjct 6463 TTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 6431 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || |||||||| | || || || || || | ||| |||||||| || ||||| | Sbjct 7255 CCGGCAAAGATAAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGCT 7196 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || |||||||| || ||||| ||||||||||| || ||||| |||||| Sbjct 7195 TTGACATTCTCAATGGTGTCCGATGCCTCAACTTCGAGAGTGATGGTTTTTCCAGTGAGA 7136 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 7135 GTCTTGACGAAGATCTGCAT 7116 >seq17886 Length=112081 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | | ||| || || || || | |||||||||||| |||||||| Sbjct 4831 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCC 4890 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||| || ||| || || ||||| || || ||||| ||||| ||| Sbjct 4891 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGA 4950 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| Sbjct 4951 GTCTTGACGAAGATTTGCAT 4970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158872536784205