Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq17868 167 6e-36 seq17886 95.1 3e-14 >seq17868 Length=20976 Score = 167 bits (184), Expect = 6e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||| || || || |||| || ||||||| | || | ||||| Sbjct 6187 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAGAGGGTGCGACCATCC 6128 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| |||| ||| || || || ||||| ||||||||||| Sbjct 6127 TCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTGTCC 6068 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||||||||| |||| || || || | |||||||| Sbjct 6067 TGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTGATCGTT 6008 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||| | ||| | |||||| Sbjct 6007 TTTCCGGTCAAAGTTTTGACGAAAATTTGCAT 5976 Score = 163 bits (180), Expect = 7e-35 Identities = 166/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||| ||||| | |||||| |||| ||| || | |||||| Sbjct 6643 AGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTGCGTCCATCT 6584 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| |||| ||| ||||| || || || |||||||||||| Sbjct 6583 TCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 6524 Query 225622 TGGATCTTTTGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || |||||||| ||| || || ||||| |||| ||| || || || |||||||| Sbjct 6523 TGAAT-TTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAATGTGATCGT 6465 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || |||||||| || | ||| | |||||| Sbjct 6464 CTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 6431 Score = 163 bits (180), Expect = 7e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| ||||||||||||||||||| ||||| |||| | || Sbjct 8344 ACGAAGACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGT 8285 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| | || || || || || ||||| || Sbjct 8284 ACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCC 8225 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| || |||||||||||| || | ||| || || | Sbjct 8224 CTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAG 8165 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || ||||| || | ||| | ||||||| Sbjct 8164 GGTGATAGTTTTTCCAGTTAAAGTCTTGACGAAGATTTGCATT 8122 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||| || || || |||| ||||| |||| | ||| | || || Sbjct 7603 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCC 7544 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || |||||||| |||| ||| || || || || || ||||||||||| Sbjct 7543 TCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCC 7484 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||||||||| |||| ||| || || | |||||| ||| Sbjct 7483 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTC 7424 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||||||| || | || | ||||||| Sbjct 7423 TTTCCGGTCAAAGTCTTCACAAAAATTTGCATT 7391 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| || || || || |||| ||||| || | | || | ||||| Sbjct 7831 AGAACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCC 7772 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || ||||| ||||||| || ||||| ||||| ||||| ||||||||| Sbjct 7771 TCAAGCTGTTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCT 7712 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| |||||| ||||| |||| ||| || || | ||||| ||| Sbjct 7711 TGGATCTTGGCCTTCACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATGGTC 7652 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | || || | ||| | |||||| Sbjct 7651 TTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 7619 Score = 136 bits (150), Expect = 9e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || || || ||||| | ||||| || | || || | |||||| Sbjct 7099 AGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTGCGACCATCT 7040 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || |||||||| |||| ||||||||| || || || || || |||||| Sbjct 7039 TCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCT 6980 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| |||||| ||||| |||| || || || | |||||| || Sbjct 6979 TGGAT-TTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGACCTCAAGCGTGATGGT 6921 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || |||||||| || | || | ||||||| Sbjct 6920 CTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 6887 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| |||||||| || ||||| |||| || || || | | || | ||||| Sbjct 6871 AGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCGAGAGGGTGCGACCATCC 6812 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| |||| || ||||| || || || ||||||||||| Sbjct 6811 TCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCC 6752 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||| |||||||| | || || || || ||||| ||| Sbjct 6751 TGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAACTTCCAAAGTGATAGTC 6692 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | || || | ||| | ||||||| Sbjct 6691 TTTCCAGTGAGGGTCTTCACGAAAATTTGCATT 6659 Score = 127 bits (140), Expect = 5e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||||| || || |||||||| || || || || |||| ||||| |||| | || | Sbjct 6422 AAGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCG 6363 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || || || |||||||| || ||||||||||| || || || || || ||||| ||||| Sbjct 6362 GCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCCTTC 6303 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||| |||||||| ||| ||| ||| |||||||| |||| || || || | || Sbjct 6302 TTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGT 6243 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| ||||| || || | || || | ||| | |||||| Sbjct 6242 GATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCATT 6203 >seq17886 Length=112081 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | || ||| || || || || || |||||||||||||||||||| | Sbjct 4831 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCC 4890 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| |||||||| || |||| || || || | || || ||||| ||||||| | Sbjct 4891 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGA 4950 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 4951 GTCTTGACGAAGATTTGCAT 4970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192243689298998