Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq18085 176 6e-39 seq17418 109 8e-19 >seq18085 Length=168442 Score = 176 bits (194), Expect = 6e-39 Identities = 469/717 (65%), Gaps = 0/717 (0%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||| || || |||||||| |||||| | || ||||| || ||||||||||| || Sbjct 29841 TTCGAACTCTTCTCCCCAGCAATCATCAAGCCCTGGGCACTCGCACGGGCACATCAAAGA 29900 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| || ||| | | || |||||||| || | ||| || | ||| || || | ||| Sbjct 29901 CCAATCCTGATCCTTTTCGACACGTTTCATGAACAAATCTGGCACCCAGAGTGCCAGAAA 29960 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 ||||| || | | | ||||| ||| || || || || | |||||| | Sbjct 29961 CAGATCACGAGCACGCTCCTCTTCGGGTCCAGTGTTTTTGCGGAGTGAAACAAACTCGAA 30020 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163 |||||| | ||||| || || || || || || | |||| || || || || || || Sbjct 30021 AATATCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCCACC 30080 Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223 |||||| | || | || ||||| || || || | | ||| ||||| | ||||| || Sbjct 30081 CTGATCGACGTAACGAGCAGTGTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTTCGA 30140 Query 78224 TGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCC 78283 ||||| || || |||| ||| ||| | || ||||| || | | | || Sbjct 30141 CGTTCCGTTGGTGCCAGCAATCACCGATCCGGTGGCACGAATCTTGTGCACGTTGAGACC 30200 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 ||||| ||||| |||| ||||| || ||||| |||| | || || ||||| ||| Sbjct 30201 GATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGATTCCCAG 30260 Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 || |||||| |||| | || || || || |||||||| | | ||||| Sbjct 30261 AATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGCATGTTCC 30320 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 | || || | || ||||| || ||||| | | ||| || | | |||||| || Sbjct 30321 AGAGTTGAAAAGAGTTGGAGAGGCGTGCGTCATGAACCGTTCCGACATCAAATTGTACGT 30380 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 ||| || ||||| | || || | || ||||| | || |||||||||||||| || Sbjct 30381 TTCGATGGCTGAAGCGATATCTTCTCCGTGTATTCCGATGGCGACACGCATCAACATCTG 30440 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 |||||| | ||| || ||| || ||||| || | | ||| || || | ||||| Sbjct 30441 CTGAGGACGTTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCAAGCGTTTT 30500 Query 78584 AAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTT 78640 || || || || |||| || |||| | ||||| | ||| | || || ||||| Sbjct 30501 GAAGCCGAAGAAGGTGTACGAGTAGTCGCGGTCGTAGACAATCGCTGAGTTGAGTTT 30557 >seq17418 Length=39954 Score = 109 bits (120), Expect = 8e-19 Identities = 133/179 (74%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 48176 AATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235 ||| | |||||||||| ||||| || ||||| || ||||| ||||| |||||||| || Sbjct 733 AATCAGTTCGTTAGAATGAGTGAGCCCTGGCATGAGCCCACGCTTTTTAAGCCAAAAAAT 792 Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | |||||||||||| ||| || || ||||| || || || || ||| |||| |||| Sbjct 793 GGAGGCGAAAGATCCACTAAAAAAGATTCCTTCGACAGCAGCGAACGCGATAAG--TCTC 850 Query 48296 TCCGTAACTG--GCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTT 48349 || | || || |||| |||| ||||| || | ||||| || ||||||||||| Sbjct 851 TCGGCAAATGACGCTTTCTTGTCCGAAATCCAACGGAGAGCCCAGTCGGCCTTCTTCTT 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694505405214880