Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq18085 159 5e-34 seq17418 118 2e-21 >seq18085 Length=168442 Score = 159 bits (176), Expect = 5e-34 Identities = 468/720 (65%), Gaps = 6/720 (1%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||| || || |||||||| |||||| | || || || || ||| |||||||| || Sbjct 29841 TTCGAACTCTTCTCCCCAGCAATCATCAAGCCCTGGGCACTCGCACGGGCACATCAAAGA 29900 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| || ||| | | || |||||||| || | ||| || | ||| || || | ||| Sbjct 29901 CCAATCCTGATCCTTTTCGACACGTTTCATGAACAAATCTGGCACCCAGAGTGCCAGAAA 29960 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 ||||| || | | ||||| ||| || || || || | ||||| | Sbjct 29961 CAGATCACGAGCACGCTCCTCTTCGGGTCCAGTGTTTTTGCGGAGTGAAACAAACTCGAA 30020 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 |||||| | ||||| || || || || || || | | ||||| || || || || || Sbjct 30021 AATATCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCCACC 30080 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 |||||| | || | |||||||| || || || | | ||| ||||| | ||||| || Sbjct 30081 CTGATCGACGTAACGAGCAGTGTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTTCGA 30140 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCC 76878 || || || || |||| ||| ||| |||||||| || | || || Sbjct 30141 CGTTCCGTTGGTGCCAGCAATCACCGATCCGGTGGCACGAATCTTGTGCACGTTGAGACC 30200 Query 76879 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTC 76938 ||||| ||||| | || || || || || || |||| | ||||||||||| ||| Sbjct 30201 GATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGATTCCCAG 30260 Query 76939 TATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || ||||| |||| | || || || || |||||||| | | ||||| Sbjct 30261 AATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGCATGTTCC 30320 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGT---GAACCATTTTTCAGAAAGTAGATTGTA 77055 | || || | || ||||| || || || ||||| || | || | | |||||| Sbjct 30321 AGAGTTGAAAAGAGTTGGAGAGGCGTGCGTCATGAACCGTT---CCGACATCAAATTGTA 30377 Query 77056 TGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACAT 77115 ||||| || ||| | ||||| | || ||||| | ||||||||||||||||| Sbjct 30378 CGTTTCGATGGCTGAAGCGATATCTTCTCCGTGTATTCCGATGGCGACACGCATCAACAT 30437 Query 77116 ATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 |||||||| ||||| ||| ||| || ||||| || | | ||| || || | || Sbjct 30438 CTGCTGAGGACGTTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCAAGCGT 30497 Query 77176 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTT 77235 ||| || || || || |||| || |||| | ||||| | ||| | || || ||||| Sbjct 30498 TTTGAAGCCGAAGAAGGTGTACGAGTAGTCGCGGTCGTAGACAATCGCTGAGTTGAGTTT 30557 >seq17418 Length=39954 Score = 118 bits (130), Expect = 2e-21 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 46665 AATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATAT 46724 ||| | |||||||||| |||||||| ||||| || ||||||||||| |||||||| || Sbjct 733 AATCAGTTCGTTAGAATGAGTGAGCCCTGGCATGAGCCCACGCTTTTTAAGCCAAAAAAT 792 Query 46725 AGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784 | |||||||||||| ||| || || ||||| ||||| ||||| |||| ||||||||| Sbjct 793 GGAGGCGAAAGATCCACTAAAAAAGATTCCTTCGACAGCAGCGAACGCGATAAGTCTCTC 852 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 |||||||||||| || |||||||| |||||| ||||| || | || || ||||| Sbjct 1126 CAAATTCTCATTGACGATTCCATCGGAAGCAGCGAAAAAGGCGAGAACTCGTGAGATAAA 1185 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 |||| ||||| | ||| || | ||| ||||| |||||||| | ||| ||||| Sbjct 1186 GTATTGCTCATCACCATTCATCTTCTCCCAATCATTCATATCTTTGCCCAGATCGACTTC 1245 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 || | |||||||||||||| |||| ||||| || | | ||| || | ||| | Sbjct 1246 CTCGACCGTCCAGAATGACGCTACTGCCTTTTTGTAGAATTCCCAGATTTGGTGATGCTT 1305 Query 47193 GATCGGAAAAATAACAAATCTATT 47216 | ||| ||||| ||||| | ||| Sbjct 1306 CAACGGGAAAATCACAAAGCGATT 1329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712766708917440