Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq17868 138 3e-27 seq17886 95.1 3e-14 >seq17868 Length=20976 Score = 138 bits (152), Expect = 3e-27 Identities = 165/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| |||||||| ||||| |||||||| |||||||| || || | | || | Sbjct 6878 GAGACGGAGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCGAGAGGGTGCG 6819 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||||||||| || ||||||||||| | | ||||||| Sbjct 6818 ACCATCCTCAAGCTGCTTT--CCGGCGAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCT 6761 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||| | || | ||||||| ||| ||||| | | Sbjct 6760 TCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAACTTCCAAA 6701 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || ||||| ||||||||||| | |||||| Sbjct 6700 GTGATAGTCTTTCCAGTGAGGGTCTTCACGAAAATTTGCATT 6659 Score = 131 bits (144), Expect = 4e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| || || || ||||| || ||||||||||| || | | || | Sbjct 7838 GAGACGGAGAACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCG 7779 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||| |||||||| ||||| ||||||||||| | || ||| || || Sbjct 7778 GCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACCCTC 7719 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || || ||| | || | |||| || || |||||||| || Sbjct 7718 CTTGTCTTGGATCTTGGCCTTCACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGT 7659 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || ||||| ||||||||||||| ||||||| Sbjct 7658 GATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 7619 Score = 129 bits (142), Expect = 1e-24 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | ||||| || || || ||||| || ||||| |||| || || Sbjct 6652 CTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTG 6593 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | |||||||| || ||||| ||||| ||||| || || |||||||| | | ||||| Sbjct 6592 CGTCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTC 6535 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| |||||||||||| ||| || |||| | |||| || || ||||| | Sbjct 6534 CTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCA 6475 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || | |||||| ||||||| ||||||| Sbjct 6474 ATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 6431 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||| |||||||| |||||||| || | || |||||| ||||| |||||||| || | Sbjct 7255 CCGGCAAAGATAAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGCT 7196 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | | |||| || ||| ||||| ||||| || ||||| || |||||| Sbjct 7195 TTGACATTCTCAATGGTGTCCGATGCCTCAACTTCGAGAGTGATGGTTTTTCCAGTGAGA 7136 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||| ||||||| |||||| Sbjct 7135 GTCTTGACGAAGATCTGCAT 7116 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| ||||| || ||||| ||||| || ||||||||||| |||| | ||| Sbjct 7612 CTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTG 7553 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || || || || ||| ||||||||||| || || ||||| || | | ||||||| Sbjct 7552 CGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCT 7493 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || |||||| | || | | |||| || || || ||||| Sbjct 7492 TCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGC 7433 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || | ||||||||| || | |||||| Sbjct 7432 GTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCATT 7391 Score = 118 bits (130), Expect = 2e-21 Identities = 157/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| |||||||| || ||||||||||||||||| |||| | || | ||||| Sbjct 8335 GAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCATC 8276 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || |||||||| | | |||||| || | | ||||| ||||| Sbjct 8275 CTCGAGCTGCTTT--CCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTG 8218 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || ||||| | || | | |||| || || || ||||| || ||| Sbjct 8217 TCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAGGGTGATA 8158 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || | |||||| ||||||| |||||| Sbjct 8157 GTTTTTCCAGTTAAAGTCTTGACGAAGATTTGCATT 8122 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| ||| || || || || || ||||| || ||||||||||| |||| | || Sbjct 6424 CTAAGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTG 6365 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || || || || || |||||||||||||| | |||||| || | | |||||| Sbjct 6364 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCCT 6305 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || || || || |||||| | || | | |||| || ||| || || || Sbjct 6304 TCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGG 6245 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || ||||| ||||||||||||| ||||||| Sbjct 6244 GTGATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCATT 6203 Score = 111 bits (122), Expect = 4e-19 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || ||||| || || ||||| ||||| |||||||| || | | || | Sbjct 7106 GAGACGGAGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTGCG 7047 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| | ||||| ||||||||||| || || || ||||| | | |||||| Sbjct 7046 ACCATCTTCCAATTGCTTT--CCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATTCCC 6989 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| ||||| ||||||| | || | |||| || ||| || ||||| Sbjct 6988 TCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGACCTCAAGC 6929 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || | |||||| || |||| |||||| Sbjct 6928 GTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 6887 Score = 109 bits (120), Expect = 1e-18 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| ||||| || ||||| ||||| || |||||||| ||||||| | || Sbjct 6196 CTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAGAGGGTG 6137 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || || ||||| ||||||||||| || || ||||| || | | |||| Sbjct 6136 CGACCATCCTCGAGCTGCTTT--CCGGCGAAGATGAGTCTTTGCTGATCTGGAGGAATTC 6079 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| || || || || || ||| | || | | |||| || ||| || || | Sbjct 6078 CTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAACCTCGA 6019 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| || || | ||| || ||||| | ||||| Sbjct 6018 GGGTGATCGTTTTTCCGGTCAAAGTTTTGACGAAAATTTGCAT 5976 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| || || || ||||||||||| | | |||||| || || |||||||| || Sbjct 7990 TTACCGGCAAAAATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGAATCTTG 7931 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| || ||| || ||||| || || || || || ||| Sbjct 7930 GCCTTGACATTCTCAATGGTGTCGGATGCCTCAACCTCAAGGGTGATGGTCTTTCCGGTG 7871 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| |||||| Sbjct 7870 AGGGTCTTGACGAAGATCTGCAT 7848 >seq17886 Length=112081 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||||||||| | || ||||| || | | |||||||||||| ||||| || || Sbjct 4831 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCC 4890 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | | | || || ||| ||||| || ||||| || || ||||| ||| Sbjct 4891 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGA 4950 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||| ||||||| ||||| Sbjct 4951 GTCTTGACGAAGATTTGCAT 4970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153542622098207