Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq17868 187 5e-42 seq17886 118 2e-21 >seq17868 Length=20976 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || || || || | ||| ||||||||||||||||||||| | Sbjct 8349 CCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAG 8290 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| || || || || || ||||||||||| || || || ||| Sbjct 8289 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 8230 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| || || ||| | ||||| ||||| || |||||||| Sbjct 8229 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACC 8170 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| || || || || |||||||| ||||| || |||||| Sbjct 8169 TCAAGGGTGATAGTTTTTCCAGTTAAAGTCTTGACGAAGATTTGCATT 8122 Score = 179 bits (198), Expect = 8e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || || || | || || || |||||||||||||||| Sbjct 7847 ACCTCCACGGAGACGGAGAACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGA 7788 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || ||||| ||||| || || | | || ||||| ||| Sbjct 7787 GAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGG 7728 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||||||||||| || || || | ||||| ||||| || |||||||| Sbjct 7727 GATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTTTCGATTGTGTCGGAGGCTTCGAC 7668 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| || ||||| ||||| || || | ||||| ||||| ||||||||| Sbjct 7667 TTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 7619 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || |||| || | ||| ||| ||||| || |||||||| | | ||||| Sbjct 6649 AGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTGCGT 6590 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || ||||||||||||| | ||| ||||| || || || ||| Sbjct 6589 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCC 6530 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||| || |||||||| ||| | || || ||||| || ||||||||||| | ||| Sbjct 6529 TTGTCTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAATGTG 6470 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||||||| || ||||||||||| ||||| ||||||||| Sbjct 6469 ATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 6431 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || || ||||| | || || ||||| ||||||||||| | Sbjct 7115 ACCTCCTCGGAGACGGAGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGA 7056 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || | ||| || ||||| ||||||| | ||||||||| || Sbjct 7055 CAGGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGG 6996 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||| ||||||||||| || ||||| || | ||||||||||| || || ||||| Sbjct 6995 GATTCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGAC 6936 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| || ||||||||||| || || || |||||| Sbjct 6935 CTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 6887 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || ||||| || ||||| || ||||| ||||| ||| Sbjct 7582 TCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGTTTTCCGGCGAAG 7523 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | ||| || || || || || |||||||| |||||||| || || || | Sbjct 7522 ATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTT 7463 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || |||||||| || || ||||| ||||| || ||||||||||| || Sbjct 7462 TCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTCACA 7403 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 7402 AAAATTTGCATT 7391 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || || ||||| | || ||||| |||||||| ||||| | Sbjct 6886 CCTCCGCGGAGACGGAGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCGAG 6827 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || ||||| ||||||| | || ||||| || Sbjct 6826 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGTGGG 6767 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | ||||||||||| || || || ||| Sbjct 6766 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAACT 6707 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | |||||| ||||| || || | ||||| ||||| || |||||| Sbjct 6706 TCCAAAGTGATAGTCTTTCCAGTGAGGGTCTTCACGAAAATTTGCATT 6659 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||||||||||| ||||| || || || ||||| ||| Sbjct 6394 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 6335 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || || || ||||| || || ||||| |||||||| || || || | Sbjct 6334 ATAAGGCGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTT 6275 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || || || || ||||| ||||| ||||| || || | ||||| ||| Sbjct 6274 TCAATGGTGTCGGAGGCCTCAACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTCACG 6215 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 6214 AAGATCTGCATT 6203 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||| | | || || || ||| || |||||||||||||| ||||| ||| Sbjct 7255 CCGGCAAAGATAAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGCT 7196 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || |||||||| || || |||||||||||||| || || || || | | Sbjct 7195 TTGACATTCTCAATGGTGTCCGATGCCTCAACTTCGAGAGTGATGGTTTTTCCAGTGAGA 7136 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 7135 GTCTTGACGAAGATCTGCAT 7116 >seq17886 Length=112081 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| |||||||| | ||| || || || || || ||||||||||||||||| || Sbjct 4831 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCC 4890 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| || || || || ||||||||||| || || ||||||||||||| | Sbjct 4891 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGA 4950 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 4951 GTCTTGACGAAGATTTGCAT 4970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046486838702318