Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq17868 165 6e-36 seq17886 86.0 5e-12 >seq17868 Length=20976 Score = 165 bits (182), Expect = 6e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| |||| | ||| ||||| || || |||||| ||||||||||| || Sbjct 6434 CATTCCTCCTCTAAGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTC 6375 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| |||| || |||||||| ||||| ||||| | ||||||||||||| Sbjct 6374 GGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGG 6315 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || ||| ||||| ||| | || | |||||||||| || || Sbjct 6314 TGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTC 6255 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || |||||||| |||||||||||||||||||| ||||| Sbjct 6254 AACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCAT 6204 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | ||| ||||| || || |||||| ||||||||||| || Sbjct 7622 CATTCCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTC 7563 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| |||| || ||||| || ||||| ||||||| | |||||||||| Sbjct 7562 GGAGAGAGTGCGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGG 7503 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||| | || | |||||||||| || ||| Sbjct 7502 TGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTC 7443 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||| || |||||||| || | |||||||| || |||||||| Sbjct 7442 GACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 7392 Score = 138 bits (152), Expect = 8e-28 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | |||| |||||| ||| |||||||| || ||||| Sbjct 6665 TTGCATTCCTCCTCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTA 6606 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| | | ||| | || ||||||||||| ||||||||||||| | ||||| || Sbjct 6605 GTCGGACAATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTC 6546 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||||| | | | | || ||||| | |||| | || ||||||| || Sbjct 6545 TGGTGGGATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGG 6487 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || ||||||||||| || | ||||| |||||||| ||||| Sbjct 6486 CTTCGACTTCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 6432 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| |||||||| ||| || |||||||||||||| |||| ||| || | || || Sbjct 8332 CACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTC 8273 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || |||||||||||||||||||||| || | || ||||| || Sbjct 8272 GAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTG 8213 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || | |||||||||| | ||| ||||| | || || || || Sbjct 8212 GATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAGGGTGATAGTTTT 8153 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||||| |||||||||||||| Sbjct 8152 TCCAGTTAAAGTCTTGACGAAGATTTGCAT 8123 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || | ||| ||| | || || Sbjct 7828 ACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCA 7769 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || ||||| || || | | |||||| |||| || | ||| ||||| || Sbjct 7768 AGCTGTTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGG 7709 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| || | || ||||||| || ||| || || | || || |||||| Sbjct 7708 ATCTTGGCCTTCACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATGGTCTTT 7649 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||||||||| ||||| Sbjct 7648 CCGGTGAGGGTCTTCACGAAGATCTGCAT 7620 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | | ||| || || || || ||| || |||||||| || Sbjct 6893 TTGCATTCCTCCGCGGAGACGGAGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATA 6834 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| ||| | || || |||||||| ||||| ||||||| | |||||| || Sbjct 6833 GTCCGAGAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTC 6774 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||||| ||| ||||| ||| | || | || ||||| | | Sbjct 6773 TGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGC 6714 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || |||||||| ||||||||||||||||| |||||||| Sbjct 6713 CTCAACTTCCAAAGTGATAGTCTTTCCAGTGAGGGTCTTCACGAAAATTTGCAT 6660 >seq17886 Length=112081 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| |||||||| | |||||||||| || | |||||||| || ||||| | Sbjct 4831 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCC 4890 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | | | ||||| |||| || || || || | ||||| ||||| ||||| || Sbjct 4891 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGA 4950 Query 44318 GTCTTCACGAAGATTTGCATGA 44339 ||||| |||||||||||||||| Sbjct 4951 GTCTTGACGAAGATTTGCATGA 4972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359907842614089