Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq17868 120 3e-22 >seq17868 Length=20976 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||| ||||| || || ||| ||||| ||||||||||| ||| Sbjct 6886 CCTCCGCGGAGACGGAGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCGAG 6827 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| |||||||| ||||| | ||| ||||| | || Sbjct 6826 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGTGGG 6767 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || | || || | ||| | | |||||| | ||| || Sbjct 6766 ATTCCTTCCTTGTCC-TGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAAC 6708 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| |||||||| ||||| Sbjct 6707 TTCCAAAGTGATAGTCTTTCCAGTGAGGGTCTTCACGAAAATTTGCAT 6660 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| || || || || ||||||||| ||||| ||||||||||| ||||| Sbjct 6421 AGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGG 6362 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| |||||||||||||||||||| || |||||||| || || | |||| | || Sbjct 6361 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCCTTCT 6302 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | |||||| | ||| ||||| | || Sbjct 6301 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGTG 6242 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| ||||| |||||||| Sbjct 6241 ATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCAT 6204 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| || || || || ||||||||| |||||||| |||||||||||||| Sbjct 6193 AGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAGAGGGTGCGA 6134 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| |||||||| || || | || || || | |||| | ||| Sbjct 6133 CCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAGGAATTCCTTCC 6074 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || || | ||| | | |||||| | ||| ||||| | || Sbjct 6073 TTGTCC-TGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGT 6015 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || |||| || || |||||||| ||||| Sbjct 6014 GATCGTTTTTCCGGTCAAAGTTTTGACGAAAATTTGCAT 5976 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| || || || || ||||||||| ||||| ||||||||||| ||||| Sbjct 7609 AGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGA 7550 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| |||||||| || |||||||| ||||| | || || || | || | | ||| Sbjct 7549 CCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCC 7490 Query 41765 TTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCG 41822 |||||| ||| || ||| || || | |||||| | || ||||| | || Sbjct 7489 TTGTCCTGGATCTTGGCCTTGACATTTTCG--ATGGTGTCGGAGGCTTCGACCTCAAGCG 7432 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || || |||| ||||| || ||||| ||||| Sbjct 7431 TGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 7392 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 41626 TACATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTT 41685 ||||| | | || || || ||||| | ||| || || || ||| || || || ||||| Sbjct 8358 TACAT-ATCTCCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTT 8300 Query 41686 ATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 |||||||||||||| || | || ||||||||||| || ||||| |||| ||||| || Sbjct 8299 GTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTG 8240 Query 41746 GTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGC 41804 || | ||||| | |||||||| | || | || || | ||| | | |||||| Sbjct 8239 ATCTGGGGGAATTCCCTCCTTGT-CTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGG 8181 Query 41805 TCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| | || || ||||| || || | ||||| ||||| || ||||| Sbjct 8180 ATGCTTCGACCTCAAGGGTGATAGTTTTTCCAGTTAAAGTCTTGACGAAGATTTGCAT 8123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462195260320400