Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 125 7e-24 >seq3 Length=15630833 Score = 125 bits (138), Expect = 7e-24 Identities = 221/320 (69%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 16999 GATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058 |||||| ||||| ||| ||||| || |||||| || || ||||| | ||| || || Sbjct 12047869 GATAAGCTCGTTGGAATGGGTCAATCCTGGCATCAGACCGCGCTTCTTGAGCCAGAAAAT 12047928 Query 17059 CGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118 || |||||||| || ||||| || ||||| |||| || |||||||| | || || Sbjct 12047929 CGACGCGAACGAGCCGCTGAAGAAGATGCCCTCAACGGCAGCGAACGCGATGAGCCGCTC 12047988 Query 17119 GGCGTACGTCGCGTCTTTGTTACG--AATCCATTTCTGCACCCACTCGGCTTTTTGCTTT 17176 |||| ||| || ||| || || |||||| || |||| ||||| |||| ||| Sbjct 12047989 GGCGAACGATGC--CTTGGTGTCGGAAATCCAACGAAGCGCCCAGTCGGCCTTTTTCTTG 12048046 Query 17177 ATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATA 17236 ||| | || | | ||||| || || | ||| |||| |||| ||| Sbjct 12048047 ATGAATTCGAACTCGAAGATGGCGTTGAACAGCTTCATGCGCTCCTTCTCGTCGCGGATA 12048106 Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296 ||||| |||||||| |||||| || |||||||||||||| ||||| || || ||| Sbjct 12048107 TACGTCTCGATGAGCTTCGAGTACATCTCCGAGTGTATGTTCTCGATGGCGATTTGGAAT 12048166 Query 17297 CCGTAAAAGCATCGGGCTTC 17316 ||||| ||| | || || || Sbjct 12048167 CCGTAGAAGAAGCGCGCCTC 12048186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517524581179320