Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1031 82.4 6e-11 seq1 82.4 6e-11 >seq1031 Length=17117 Score = 82.4 bits (90), Expect = 6e-11 Identities = 187/277 (68%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || ||||| || |||| || ||||||||| | ||||||||||| |||| || Sbjct 1288 GGAGATCTTGGACCGGTTTATGGATTCCAGTGGCGGCATTTTGGAGCAAAATACGTGGAT 1229 Query 18849 TGTCAATCAAACTATTTACAG--CAAGGAATCGATCAGCTGCAAACTGTTA-TAGATACA 18905 ||||| | | || || | ||||| ||||||||| || || | | || | | Sbjct 1228 TGTCATACGGATTA--CACTGGACAAGGCATCGATCAGTTGGCTGAAGTCATTCGACA-A 1172 Query 18906 ATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 || || | | || || ||| || |||| ||| ||||| | ||||||||| |||| || Sbjct 1171 ATCAAGGAAGAACCTGACAGCAGAAGAATCATTTTATCGGCGTGGAATCCATCGGATCTC 1112 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAA 19025 ||||| ||||| |||||||| || | || ||||| ||||| | ||||| || Sbjct 1111 GGGCAGATGGTTCTACCACCATGTCATACAATGTGCCAGTTCTACGTGGATAACGGAGAG 1052 Query 19026 TTATCCTGCCAAGTATACCAGAGATCGGGGGATATGG 19062 | || || || | || ||| || || || |||| Sbjct 1051 CTGTCTTGTCAGCTGTATCAGCGAAGTGGAGACATGG 1015 >seq1 Length=16658584 Score = 82.4 bits (90), Expect = 6e-11 Identities = 187/277 (68%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || ||||| || |||| || ||||||||| | ||||||||||| |||| || Sbjct 11625140 GGAGATCTTGGACCGGTTTATGGATTCCAGTGGCGGCATTTTGGAGCAAAATACGTGGAT 11625081 Query 18849 TGTCAATCAAACTATTTACAG--CAAGGAATCGATCAGCTGCAAACTGTTA-TAGATACA 18905 ||||| | | || || | ||||| ||||||||| || || | | || | | Sbjct 11625080 TGTCATACGGATTA--CACTGGACAAGGCATCGATCAGTTGGCTGAAGTCATTCGACA-A 11625024 Query 18906 ATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 || || | | || || ||| || |||| ||| ||||| | ||||||||| |||| || Sbjct 11625023 ATCAAGGAAGAACCTGACAGCAGAAGAATCATTTTATCGGCGTGGAATCCATCGGATCTC 11624964 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAA 19025 ||||| ||||| |||||||| || | || ||||| ||||| | ||||| || Sbjct 11624963 GGGCAGATGGTTCTACCACCATGTCATACAATGTGCCAGTTCTACGTGGATAACGGAGAG 11624904 Query 19026 TTATCCTGCCAAGTATACCAGAGATCGGGGGATATGG 19062 | || || || | || ||| || || || |||| Sbjct 11624903 CTGTCTTGTCAGCTGTATCAGCGAAGTGGAGACATGG 11624867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399488180765205