Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 168 8e-37 >seq3 Length=15630833 Score = 168 bits (186), Expect = 8e-37 Identities = 447/677 (66%), Gaps = 12/677 (2%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || |||||||||||||| ||| || | | || |||||||| |||||||| || | | Sbjct 10143230 GGGCACATCAACGACCAATCTTGATCTTTTTCGACACGTTTCATGAAGAGATCTGGCACC 10143171 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTA 54112 || ||||| | || | || | | | ||||||| | | || || |||||| | Sbjct 10143170 CAGAGAGCCAAGAACAAGTCACGAGCAC---GTTCCTCTTCTGGTCCGGTGTTCTTTCGA 10143114 Query 54113 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCA 54172 ||| | | ||| | | || || | |||||| || |||||||| |||| | |||| Sbjct 10143113 AGAGCAACAAACTCGAAGATGTCGGCATGCCATGGCTCCAAGTAGATGGCGAATGCTCCT 10143054 Query 54173 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 54232 || || ||||| ||||| ||||| | ||| | ||| ||||| || || || | | |||| Sbjct 10143053 GGTCGCTTGTTGCCTCCTTGATCAACGTAACGAGCAGTGTTGTTGTAGACACGAAGCATT 10142994 Query 54233 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 54292 || || | |||||||||| || ||||| |||| || ||| | ||||| || Sbjct 10142993 GGTATGAGTCCATTGGATGTTCCGTTGGTTCCGGCAATCACTGAACCAGTTGCACGGATC 10142934 Query 54293 TTA--CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 54350 || | ||||| |||| || || || || | || ||||| | ||||| | || | Sbjct 10142933 TTGTGCACATTGA--GACCGATTCCTCCGGCACTCTTTGAGATCAGAGCGCACTGCTTCA 10142876 Query 54351 ACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGAC 54409 | || || ||||| || || || || |||| || || |||| || |||| Sbjct 10142875 AAGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAG-CATGAAGAC 10142817 Query 54410 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 54469 || || |||| | ||||| | || || | || || ||||| || || | | Sbjct 10142816 ATCTGTGGACGGCATGTTCCAGAGTTGAAAAGAGTTGGCGAAGCATGTGTCATGTACCGC 10142757 Query 54470 TCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 54529 || || | | ||||||||||| || || | | | || || | || ||||| | Sbjct 10142756 TCCGACATCAAGTTGTACGTCTCAATCGCCGCGGCAATGTCGTTTCCGTGGATTCCAATG 10142697 Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAG 54589 ||||||||||| ||||| ||||| ||||| || |||| | ||||| || || || | | Sbjct 10142696 GCGACACGCATCAACATCTGCTGTGGTCTCTCGACGACTTCCTTGTTGATCTTGAGAAGG 10142637 Query 54590 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 54649 || || || | || || || ||||| ||| |||| || | |||| ||||| | Sbjct 10142636 TAAGAACGCTCGAGCGTCTTGAATCCAAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACG 10142577 Query 54650 ATAACTGAGTTGAGTTT 54666 || | |||||||| || Sbjct 10142576 ATGGCGGAGTTGAGCTT 10142560 Score = 123 bits (136), Expect = 3e-23 Identities = 323/492 (66%), Gaps = 3/492 (1%) Strand=Plus/Minus Query 52797 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856 |||| || | ||||| |||| || | | || || || ||||| | |||||||||| Sbjct 10144708 CCTTATCGACAGTGAACTGAACGGCATTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 10144649 Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916 | || || || || |||||||||| || ||||| || | || || || | Sbjct 10144648 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGCGGCGTAGCTTG 10144589 Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976 | | || || ||||| || | ||||| |||||||||||| ||||| | || |||| Sbjct 10144588 GCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCCACGATCGGCAG 10144529 Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 53036 |||| | || ||| ||| |||| || ||||| | ||| |||| | ||| || | Sbjct 10144528 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAGTTCCTTGATGT 10144469 Query 53037 CTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGA 53093 | ||||||| || |||| || || |||||| | | || | | |||||| | Sbjct 10144468 CGTCTGGAATTCCTGGAATATTTTGGATGGATCCATTGTTGGCGATGAGACGATTCTTCA 10144409 Query 53094 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 53153 | ||||| ||| ||| |||||| | | | | || | || ||||| || | || Sbjct 10144408 TGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGTGTGGATTGACGATTT 10144349 Query 53154 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 53213 | || || || || | || | |||| ||| || ||| || || || || | || | Sbjct 10144348 GGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTAGAAGTGTATGGCTCAATCGATT 10144289 Query 53214 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 53273 | || ||||| | || |||||||| || ||||| ||||| || |||| | | ||| | Sbjct 10144288 CGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATGAGGAGACTGT 10144229 Query 53274 TTCTAAGACCGT 53285 | | || ||||| Sbjct 10144228 TGCGAACACCGT 10144217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593697487481520