Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 >seq3 Length=15630833 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | |||||||| || | |||||||||||| || ||||| ||||||| Sbjct 4183835 TTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 4183776 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| ||||||| ||||| || || || | || |||||||||||||| | Sbjct 4183775 AAAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTG 4183716 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||| || ||| || | ||| ||||| | |||| Sbjct 4183715 GGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCA 4183656 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || || || || || ||||||||||| || |||||||| Sbjct 4183655 CCTCCAGGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4183607 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | |||||||| ||| | |||||||||||| || ||||| ||||||| Sbjct 4184802 TTCCTCCTCTGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 4184743 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | ||||||||||| || || || | || ||||||||||| || | Sbjct 4184742 AAAGAGTTCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 4184683 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| ||| || | ||| || ||| | ||| Sbjct 4184682 GGATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATTGTGTCAGAAGCTTCCA 4184623 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || |||||||| ||||| | || ||||| || |||||||| Sbjct 4184622 CTTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 4184574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||| || | ||| | || ||||||||||| ||||| ||||| | Sbjct 4186263 TCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGA 4186204 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || | ||||||| ||||| || || || | || | | ||||||||| || Sbjct 4186203 CAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGG 4186144 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| ||| || || || | ||| || ||| | ||| Sbjct 4186143 GATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGAC 4186084 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||| |||||||| ||||| | || |||||||| || ||||| Sbjct 4186083 TTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | |||||||||||| || ||||| ||||| | Sbjct 1643868 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1643927 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| || || || || || | || | ||| |||||||| || Sbjct 1643928 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 1643987 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | ||| ||||| || ||| | Sbjct 1643988 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 1644047 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| ||||| || || | || ||||| || |||||||| Sbjct 1644048 TCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 1644094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | |||||||| || | |||||||||||| || ||||| ||||| | Sbjct 4185532 TTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 4185473 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | | ||||| ||||| || || || | || | || ||||| || | Sbjct 4185472 ACAAGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCG 4185413 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||| || ||| || | | | || || | ||| || Sbjct 4185412 GGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTC-CGAAGCTTCG 4185354 Query 21127 -TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || |||||||| ||||| | ||| ||||| || || ||||| Sbjct 4185353 ACTTCCAAAGTGATGGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422242479723284