Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 168 7e-37 >seq3 Length=15630833 Score = 168 bits (186), Expect = 7e-37 Identities = 255/359 (71%), Gaps = 8/359 (2%) Strand=Plus/Minus Query 116806 CGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865 ||| || ||| | | || || |||| | |||||||| | ||||||||| || || || Sbjct 12048217 CGAACGCTTCTCGAACGAAGTCAAGGTCTCTGAGGCGCGCTTCTTCTACGGATTCCAAAT 12048158 Query 116866 CGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTC 116925 |||||| |||||| | |||||||| ||||| |||| |||||||| ||||| | ||| Sbjct 12048157 CGCCATCGAGAACATACACTCGGAGATGTACTCGAAGCTCATCGAGACGTATATCCGCGA 12048098 Query 116926 TTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCG--TGCGTCAAAGAG 116983 | ||||| | |||| ||||||||| ||| || | | |||| | Sbjct 12048097 CGAGAAGGAGCGCATGAAGCTGTTCAACGCCATCTT--CGAGTTCGAATTCATCAAGAAA 12048040 Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| |||||||| || ||||| ||| || |||| | |||| |||||| || Sbjct 12048039 AAGGCCGACTGGGCGCTTCGTTGGATTTCCGACACCAAGGCATCGTTCGCCGAGCGGCTC 12047980 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 | || ||||| ||||| |||||| ||||||| ||| ||||| | || || ||| Sbjct 12047979 ATCGCGTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTTCGCGTCGATTTTCTGG 12047920 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGA--CTTTCAGCAACGAGCTCATCTCCAGG 117160 |||||||| ||||| || ||||| || ||| | ||| ||||||||| ||||| ||| Sbjct 12047919 CTCAAGAAGCGCGGTCTGATGCCAGGATTGACCCATTC--CAACGAGCTTATCTCGAGG 12047863 Score = 125 bits (138), Expect = 7e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || || |||||||| | || ||||| || | Sbjct 4183834 AATGCAAATCTTCGTCAAGACACTCACTGGAAAGACCATCACTTTGGAGGTCGAGGCTTC 4183893 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | |||||| || |||| ||||| ||||| ||||| | || || Sbjct 4183894 CGATACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCA 4183953 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||||| ||| || || ||||| || || | || |||||| |||||||| Sbjct 4183954 GCAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAA 4184013 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 4184014 CATCCAGAAGGA 4184025 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||| || || || ||| |||| ||||| ||| || Sbjct 1644094 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCC 1644035 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| || || || || | |||||| Sbjct 1644034 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 1643975 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| || || || || || || | || || ||| |||||||||| Sbjct 1643974 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 1643915 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 1643914 ATCCAGAAGGAGTCCACTCTCCA 1643892 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| |||||| | || || ||||| |||||| | || || || || || Sbjct 4183607 ATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCCTGGAGGTGGAGGCTTCC 4183666 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| | ||||| | ||||| || || ||||| | |||||| Sbjct 4183667 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 4183726 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||||||| ||| || || ||||| || |||| | || || ||||||||| Sbjct 4183727 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTTTCGGACTACAAC 4183786 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 4183787 ATCCAGAAGGAGTCCACTCTCCA 4183809 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || |||||||| |||| |||||||| | Sbjct 4185075 AATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTC 4185134 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||| | || |||| ||||| ||||| || || | ||||| Sbjct 4185135 TGACACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCA 4185194 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||||| ||| || || || || || || | || || || ||| ||||| Sbjct 4185195 GCAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAA 4185254 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 4185255 CATCCAGAAGGAGTCTACTCTCCATCTCGT 4185284 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || |||||||| | || |||||||| | Sbjct 4185304 ATGCAGATCTTCGTCAAGACGCTTACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4185363 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||| | ||||| || || ||||| | || ||| Sbjct 4185364 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCGCCAGATCAG 4185423 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| ||| || || ||||| || || | || ||| | |||||||||| Sbjct 4185424 CAACGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACCTTGTCCGACTACAAC 4185483 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 4185484 ATCCAGAAGGAGTCCACTCTCCA 4185506 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || |||||||| | || || ||||| | Sbjct 4184574 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTTTGGAAGTGGAAGCTTCT 4184633 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | || || | ||||| ||||| ||||| | || ||| Sbjct 4184634 GACACAATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAG 4184693 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||||||| ||| || || |||||||| || | | || || ||||||||| Sbjct 4184694 CAGAGACTCATCTTCGCCGGAAAGCAGCTGGAGGATGGAAGAACTCTTTCGGACTACAAC 4184753 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| |||| || ||| | ||| Sbjct 4184754 ATCCAGAAGGAGTCCACTCTCCATTTGGTG 4184783 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || ||||| || | Sbjct 4186036 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATCACCTTGGAAGTCGAGGCTTCT 4186095 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | ||||| || || ||||| | |||||| Sbjct 4186096 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 4186155 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || || ||||| || |||| ||||| | |||||||||| Sbjct 4186156 CAGCGCTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACTTTGTCCGACTACAAC 4186215 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| | || || ||||| || Sbjct 4186216 ATCCAAAAGGAGTCGACCCTTCATCTCGT 4186244 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| || || || || || ||||| | || || |||||| | Sbjct 4184345 AATGCAGATTTTCGTGAAAACTCTTACTGGAAAGACTATCACTCTAGAGGTTGAAGCCTC 4184404 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| |||| | || || | ||||| || || || || | || | Sbjct 4184405 GGACACTATTGAAAACG-TCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATC 4184463 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| || | |||| ||| || || ||||| || || | || |||||| ||||||| Sbjct 4184464 AGCAAAGATTGATCTTCGCCGGGAAGCAGCTTGAGGATGGTCGTACCCTCTCGGACTACA 4184523 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| | || || || || || Sbjct 4184524 ACATCCAGAAGGAGTCTACTCTTCACCTCGT 4184554 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || |||||||| |||| |||||||| | Sbjct 4185531 AATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTC 4185590 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| || || | || || || || ||||| | |||| Sbjct 4185591 TGACACCATCGAAAACGTT-AAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACC 4185649 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| ||||||||| ||| || || || |||| || | | || || || |||| Sbjct 4185650 AACAAAGACTCATCTTCGCCGGGAAGCAATTGGAAGATGGTAGAACTCTGTCGGATTACA 4185709 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||| |||||| | ||||| ||||| || Sbjct 4185710 ACATCCAAAAGGAGTCGACGCTCCATCTTGT 4185740 Score = 105 bits (116), Expect = 7e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 117239 GAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTG 117298 |||||| ||| ||||| ||||||||||||||| |||||||||||||||||||| || Sbjct 12047159 GAGATCATCAGAGACGCCGTCGCCATCGAGCAGGAGTTCCTCACCGAAGCGCTGCCCGT- 12047101 Query 117299 CGTC-TGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAG 117357 || | || | ||| | || ||| ||||||||| |||||||||||||| ||||| Sbjct 12047100 CGACATGATCGGAATGAACTGCCGGCTGATGTCGCAGTACATCGAGTTCGTTGCCGATCA 12047041 Query 117358 GCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAAC 117394 ||||| | ||||| | ||| |||| |||||| Sbjct 12047040 TCTGCTCCAGGAGCTCGGATGCGATAAGCTGTACAAC 12047004 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 || |||||||| ||||| | | | ||| || || |||| | ||||| ||||||| Sbjct 12048474 CGTTTCGTGATCTTCCCGCTGCGACACCATGAGATTTGGCAGTTCTACAAGAAGGCCGTC 12048415 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC 116722 || ||||| ||||| |||||||||||||| || ||| || | || ||| |||||| Sbjct 12048414 GCCTCGTTTTGGACTGTCGAGGAGGTGGATTTGGGCAAAGATATGAACGATTGGGAGAAG 12048355 Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 |||| | | |||||| | |||||| || || ||||| ||||||||| ||| Sbjct 12048354 ATGAATGGCGACGAGCAGTACTTCATCTCCAGGGTCCTTGCCTTCTTCGCCGCCTCCGAT 12048295 Query 116783 GGCATCGTCAACGAGAATCTGGT 116805 || || || || ||||| |||| Sbjct 12048294 GGTATTGTTAATGAGAACTTGGT 12048272 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || ||||||||||| |||| ||||||||| | Sbjct 4184062 AATGCAGATCTTCGTCAAGACACTCACTGGAAAAACCATCACACTCGAAGTCGAAGCCTC 4184121 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | |||||| || || | ||||| || || ||||| | || || Sbjct 4184122 CGACACCATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 4184181 Query 40809 GCAACGACTCATCT 40822 ||||||| | |||| Sbjct 4184182 GCAACGATTGATCT 4184195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515198275660240