Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1031 87.8 1e-12 seq1 87.8 1e-12 >seq1031 Length=17117 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||| |||||||||||||| ||| |||||||||||||| |||||||| ||||||||||| Sbjct 1236 TATTTTGCTCCAAAATGCCGCCACTGGAATCCATAAACCGGTCCAAGATCTCCTTCTTCG 1295 Query 97462 CTATCACAGAAACCAAGCTTATC 97484 | | || ||| || || || || Sbjct 1296 CGAGCAGTGAATCCGAGATTGTC 1318 >seq1 Length=16658584 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||| |||||||||||||| ||| |||||||||||||| |||||||| ||||||||||| Sbjct 11625088 TATTTTGCTCCAAAATGCCGCCACTGGAATCCATAAACCGGTCCAAGATCTCCTTCTTCG 11625147 Query 97462 CTATCACAGAAACCAAGCTTATC 97484 | | || ||| || || || || Sbjct 11625148 CGAGCAGTGAATCCGAGATTGTC 11625170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346770268328930