Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 >seq3 Length=15630833 Score = 131 bits (144), Expect = 1e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| || || |||||||||||| | ||| || ||||||||| || Sbjct 4185278 TGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGC 4185219 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| ||| ||||||| | |||||| || || || || |||||||||||| ||| || Sbjct 4185218 TTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTG 4185159 Query 118656 TGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | |||| |||||| | ||| |||||||||| || | || || || || Sbjct 4185158 GCTTTGACATTCTCGATGGTGTCAGAAGCT-TCGACCTCGAGAGTGATGGTCTTTCCAGT 4185100 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || || |||||||| Sbjct 4185099 CAGAGTCTTGACGAAGATCTGCAT 4185076 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| ||||| |||||||| ||| || |||||| ||||||||||| |||||| Sbjct 4186232 GTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCA 4186173 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| || || || || || ||||||||| ||||| || Sbjct 4186172 GCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTG 4186113 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | |||||| || | ||| | || || ||||| ||||| Sbjct 4186112 ACATTCTCGATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTCTTTCCGGTAAGAGTC 4186053 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 4186052 TTGACAAAGATCTGCAT 4186036 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| ||| || || || |||||| Sbjct 4185513 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCCTC 4185454 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||||||| |||| | || |||||||| || || || || ||||||||| Sbjct 4185453 AAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCGGGATTCCTTCCTTGTCTTG 4185394 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||| ||| || | || | |||||||| ||| ||||| || | || | || | Sbjct 4185393 GATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCT-TCGACTTCCAAAGTGATGGTCT 4185335 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || || || || |||||||| Sbjct 4185334 TTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| || | ||| | ||||| Sbjct 4183816 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCGTCCTC 4183757 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||| ||| ||||||| | |||||| || || || || || ||||||||| Sbjct 4183756 AAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 4183697 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | |||| ||| || | ||| ||||| | ||| | ||||| Sbjct 4183696 GATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTT 4183637 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| ||||| || || || |||||| Sbjct 4183636 TCCTGTCAACGTTTTGACGAAGATTTGCATG 4183606 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || ||||| || || |||||||| || | ||| | |||||| Sbjct 4184783 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTC 4184724 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||| ||| ||||||| | ||||||||| || || || |||||||||||| Sbjct 4184723 CAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTG 4184664 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 || || ||| || | |||| ||||| | ||| || || || | || | || | Sbjct 4184663 GATCTTGGCTTTGACATTCTCGATTGTGTCAGAAGCT-TCCACTTCCAAAGTGATGGTCT 4184605 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || || || || || ||||| Sbjct 4184604 TTCCGGTGAGGGTCTTGACGAAGATTTGCAT 4184574 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || || || |||||||| || | || || |||||| Sbjct 4184043 ACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCCTCA 4183984 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| ||||||| | ||||||||| || || || |||||||||||| | Sbjct 4183983 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 4183924 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || | ||||||||| | || | || || Sbjct 4183923 ATCTTGGCCTTGACATTCTCAATGGTATCGGAAGCCTCGACCTCCAAAGTGATGGTCTTT 4183864 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || || ||||| Sbjct 4183863 CCAGTGAGTGTCTTGACGAAGATTTGCAT 4183835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| ||||| ||||||||||| || ||| | ||| || | Sbjct 4185739 CAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGACAGAGTTCTACCATCTTCCA 4185680 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 || || || ||| ||||||| | || || || || || || || ||||| || | Sbjct 4185679 ATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGA 4185620 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || ||||| | ||||| |||||| | ||| |||||||||| || | || || Sbjct 4185619 TCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCT-TCGACCTCGAGAGTGATGGTCTTT 4185561 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || || || |||||||| Sbjct 4185560 CCAGTCAGAGTCTTGACGAAGATCTGCAT 4185532 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || | || || |||||| ||||| || || Sbjct 4184542 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCCTCAAGCTGCTTCCCG 4184483 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | |||||||| || || || || |||||||| || || ||| Sbjct 4184482 GCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTG 4184423 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||||| | || ||||| | || | || || || || |||||| Sbjct 4184422 ACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTGATAGTCTTTCCAGTAAGAGTT 4184363 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 4184362 TTCACGAAAATCTGCAT 4184346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433813221536308