Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq1976 84.2 8e-12 >seq1976 Length=10667 Score = 84.2 bits (92), Expect = 8e-12 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 3806 GATGTGACCGTGAACATCAACAGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTAC 3865 |||||||| || ||| |||| || || || | | ||| | || ||||||| ||| Sbjct 5589 GATGTGACTGTCAACGTCAATTCACCGGGTGGGAATTTCTTCAACGGGTTGGCCATCTAC 5530 Query 3866 AACCTGCTGCGCGAGCACAAGGGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCT 3925 || ||||||| | |||| || || || ||| | || | ||||| |||| | ||| Sbjct 5529 AATTTGCTGCGTGCGCACCCGGCGAAAGTAACGATCAATGTGATCGGAATGGCGGGTTCT 5470 Query 3926 GCCGCCTCTTTCATCGCCATGGCGGGGGATGAAATC 3961 || || ||| | ||||||||||| |||||||||||| Sbjct 5469 GCGGCATCTGTAATCGCCATGGCTGGGGATGAAATC 5434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180434638224744