Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 8e-15 >seq3 Length=15630833 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||| ||||| ||||||||||| || || ||| | || Sbjct 4184046 AGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCC 4183987 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| | |||||| || || | | ||||||||| Sbjct 4183986 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCT 4183927 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||||| | ||||| |||| |||||||| Sbjct 4183926 TGAATCTTGGCCTTGACATTCTCAATGGTATCGGAAGCCTCGACCTCCAAAGTGATGGTC 4183867 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || ||||| ||||| Sbjct 4183866 TTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 4183835 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| |||||||||||||||| ||| | || Sbjct 4185515 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCC 4185456 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 || | |||||| || ||||| || | || ||||| || | |||| | | |||||||| Sbjct 4185455 TCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCGGG-ATTCCTTCCTTGTC 4185397 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | || | || | | |||||| |||| ||||||| Sbjct 4185396 TTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGG 4185338 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || ||||| || || || || ||||||||||| Sbjct 4185337 TCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || | |||| || ||||| |||||||| ||||| || ||| | || Sbjct 4185287 AGAACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGTCCATCC 4185228 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||| ||||| | ||||||||| || | | ||||||||| Sbjct 4185227 TCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT 4185168 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | || | || | | |||||| || | |||||||| Sbjct 4185167 TGAATCTTG-GCTTTGACATTCTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGT 4185109 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || ||||| || || ||||||||||| Sbjct 4185108 CTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 4185076 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || |||||||||||||||| || |||| || | |||||| || ||||| Sbjct 4186226 TCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAG 4186167 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| || | | |||||||| || || ||| | || Sbjct 4186166 ATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTC 4186107 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||||| |||| |||||||| || ||||| ||||| || ||| Sbjct 4186106 TCGATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGACA 4186047 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 4186046 AAGATCTGCAT 4186036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323059207257440