Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 2e-11 >seq3 Length=15630833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| || | || || || || || ||||| |||||||| || | | Sbjct 4185758 CCTCCACGGAGACGAAGGACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGAC 4185699 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| |||||||||||| || || || |||| ||||||||||| || || Sbjct 4185698 AGAGTTCTACCATCTTCCAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGG 4185639 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 4185638 ATTCCTTCCTTATC 4185625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379328979044505