Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 248 8e-61 >seq3 Length=15630833 Score = 248 bits (274), Expect = 8e-61 Identities = 478/694 (69%), Gaps = 16/694 (2%) Strand=Plus/Minus Query 23254 TTGGTACAACGCGTCA--AATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCAT 23310 |||| | || ||||| ||||| | || | ||||| | || || |||| | |||| Sbjct 10143290 TTGGCATAAAGCGTCTCGAATTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCACTCGCAT 10143231 Query 23311 CGGACACATGA--GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGT 23368 || ||||| | ||| | | |||| || ||||| || ||| |||| || ||||| || Sbjct 10143230 GGG-CACATCAACGAC-CAATCTTGA-TCTTTTTCGACACGTTTCATGAAGAGATCTGGC 10143174 Query 23369 ATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTC 23428 | ||| ||||| |||||| || || || || |||| ||| |||||||||||| Sbjct 10143173 ACCCAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTTCTTTCGA 10143114 Query 23429 AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCC 23488 | | | | ||| || || | ||| |||||||| ||||| | ||| | ||| || || || Sbjct 10143113 AGAGCAACAAACTCGAAGATGTCGGCATGCCATGGCTCCAAGTAGATGGCGAATGCTCCT 10143054 Query 23489 GGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATC 23548 |||| ||| ||||| || ||||| |||||||| || ||||||||||| || | ||||| Sbjct 10143053 GGTCGCTTGTTGCCTCCTTGATCAACGTAACGAGCAGTGTTGTTGTAGACACGAAGCATT 10142994 Query 23549 GGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA-CACTCGAACCTTTTGCTCGAAC 23607 || | ||| || ||||| | ||| || || | |||| ||||| |||| || | Sbjct 10142993 GGTATGAGTCCATTGGATGTTCCGTTGGTTCCGGCAATCACT-GAACCAGTTGCACGGAT 10142935 Query 23608 GTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAG 23667 ||||| || | || ||| || |||||| | || || |||| ||||| || |||| Sbjct 10142934 CTTGTGCACATTGAGACCGATTCCTCCGGCACTCTTTGAGATCAGAGCGCACTGCTTCAA 10142875 Query 23668 AGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACAT 23727 |||||||||||| || || |||||| | ||| | |||||| || |||||||| Sbjct 10142874 AGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAGCATGAAGACAT 10142815 Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787 || | | || | | ||| || || || || || || | ||| | | Sbjct 10142814 CTGTGGACGGCATGTTCCAGAGTTGAAAAGAGTTGGCGAAGCATGTGTCATGTACCGCTC 10142755 Query 23788 CGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGC 23847 |||||| | |||||||| || || || || ||||||| | |||||| || || ||||| Sbjct 10142754 CGACATCAAGTTGTACGTCTCAATCGCCGCGGCAATGTCGTTTCCGTGGATTCCAATGGC 10142695 Query 23848 GACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCC---GTTAATTTTGAACAG 23904 ||| ||||||| ||| | || ||||||||||| ||| | ||| || |||| || Sbjct 10142694 GACACGCATCAACATCTGCTGTGGTCTCTCGAC---GACTTCCTTGTTGATCTTGAGAAG 10142638 Query 23905 ATATGAACGTTGCATCGTTTTAAATCCAAAATAG 23938 || ||||| | | ||| || |||||||| ||| Sbjct 10142637 GTAAGAACGCTCGAGCGTCTTGAATCCAAAGTAG 10142604 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || || ||||| |||| || ||| | || Sbjct 4185532 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTCT 4185591 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || ||| |||||||| | || || ||||| Sbjct 4185592 GACACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAA 4185651 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || || || |||||||| || ||| || ||||| ||| Sbjct 4185652 CAAAGACTCATCTTCGCCGGGAAGCAATTGGAAGATGGTAGAACTCTGTCGGATTACAAC 4185711 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || ||||| || ||||| || ||| | || | || |||| Sbjct 4185712 ATCCAAAAGGAGTCGACGCTCCATCTTGTCCTTCGTCTCCGTGGAGGTA 4185760 Score = 100 bits (110), Expect = 3e-16 Identities = 239/356 (67%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 |||| | || || | ||||| | || | |||||| | | ||| |||||||| ||| | Sbjct 12048217 CGAACGCTTCTCGAACGAAGTCAAGGTCTCTGAGGCGCGCTTCTTCTACGGATTCCAAAT 12048158 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 ||||| || ||| | || || || ||||| ||| |||||||| ||||| | || Sbjct 12048157 CGCCATCGAGAACATACACTCGGAGATGTACTCGAAGCTCATCGAGACGTATATCCGCGA 12048098 Query 57860 CAACGACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGA 57918 | | | ||| | | || ||||||||||| ||| | | | || || ||||| Sbjct 12048097 CGAGAAGGAGCGCATGAAG-CTGTTCAACGCCATCTT--CGA-GTTCGAATTCATCAAGA 12048042 Query 57919 A---GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGC 57975 | ||| || ||| | | ||||| | ||| ||| ||||||||||| ||| Sbjct 12048041 AAAAGGCCGACTGGGCGCTTCGTTGGATTTCCGACACCAAGGCATCGTTCGCCGAGCGGC 12047982 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035 | ||||||||||| ||||| || || || ||||| ||| || ||| | || || | Sbjct 12047981 TCATCGCGTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTTCGCGTCGATTTTCT 12047922 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 || | ||||| ||||| |||||||| || |||| | ||||||| | || ||| Sbjct 12047921 GGCTCAAGAAGCGCGGTCTGATGCCAGGATTGACCCATTCCAACGAGCTTATCTCG 12047866 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || |||||| | || || || | || Sbjct 4186036 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATCACCTTGGAAGTCGAGGCTTCT 4186095 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | ||| ||||||||||| | || || |||||| Sbjct 4186096 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 4186155 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || |||||||| || ||| | || ||| ||| || ||| || ||| Sbjct 4186156 CAGCGCTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACTTTGTCCGACTACAAC 4186215 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || ||||| |||||||| || || Sbjct 4186216 ATCCAAAAGGAGTCGACCCTTCATCTCGTTCT 4186247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| ||||||||| ||||| || || ||||||| ||||| |||||| | || || || Sbjct 4183602 CAATCATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCCTGGAGGTGGAGG 4183661 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | |||| | |||||| | ||| ||||||||||| | || || | Sbjct 4183662 CTTCCGATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAG 4183721 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || ||||| || || ||| | || ||| | ||| | || | Sbjct 4183722 ACCAGCAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTTTCGGACT 4183781 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || || ||||| || |||| || Sbjct 4183782 ACAACATCCAGAAGGAGTCCACTCTCCACTTGGTGCT 4183818 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || || ||||| |||| || ||| | || Sbjct 4185076 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTCT 4185135 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || |||||||| || | || || |||||| Sbjct 4185136 GACACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAG 4185195 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | || || ||||| || || || | || || | | | ||| | |||||| || Sbjct 4185196 CAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGA-TGGACGTACTCTTTCCGATTACAA 4185254 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || ||||| ||||| || ||| | || | || |||| Sbjct 4185255 CATCCAGAAGGAGTCTACTCTCCATCTCGTTCTTCGTCTCCGTGGAGGTA 4185304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445748296312080