Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq1878 89.7 2e-13 >seq1878 Length=10347 Score = 89.7 bits (98), Expect = 2e-13 Identities = 240/357 (67%), Gaps = 19/357 (5%) Strand=Plus/Plus Query 16758 TCGGCGAGGACGAGCTCGAGCATCCGGTGGGGCGCGACGAGATTCGCATTGCTCCGGTAA 16817 ||||| ||| || | || ||||||| || | || |||||| || || || || Sbjct 8506 TCGGCATGGAGGAAATGCAGTATCCGGTTGGAGGAGAGCCGATTCGGATAGCGCCTGTCC 8565 Query 16818 TCGTCGGCAGCAA-GCGCGGCGGGCTCTTCAACACGATTCTCGGCGCCGCACTCGTCGCT 16876 | | ||| ||||| ||||| || || || | |||||||| ||||| | || ||| | Sbjct 8566 TTG-CGGGAGCAAAGCGCGCGGGTCTATTTCAGACGATTCTGGGCGCGGTGCTGATCGTT 8624 Query 16877 GTCGGCGCGATCGCGACGTTC----GGTTTCGCGCAGCCG--TGGGGCGCATCGCTGATG 16930 ||||| ||| | ||| | | || | |||| ||| ||| ||| || ||||| Sbjct 8625 GTCGGAGCGGTGCTGACATACACCGGGGTCGGCGCC-CCGATTGGTACGC--CGATGATG 8681 Query 16931 GGGCTCGGTGCGTCGATGGCATTGGGCGGCATCGTGCAGATGCTCAGTCCGCAACAGGCC 16990 | || ||| ||||||| ||||| || | ||||||||||| || || ||| Sbjct 8682 AAAATTGGCGCGGCGATGGCGTTGGGGGGTGTGGTGCAGATGCTTTCGCCTCAGCAGCGG 8741 Query 16991 GGGCT----CGCGGGGACGGCC--AACAACGGCACGTCGTACTACTTCAACGGACCCGTG 17044 ||||| | | ||||||| | |||||| | || ||| |||| ||||| || ||| Sbjct 8742 GGGCTAAGCAGTGCTGACGGCCCTGAGAACGGCGCTTCCTACAACTTTAACGGTCCAGTG 8801 Query 17045 AACAGTGCGGCGCAGGGCGAACCGGTGCCGCTCGT-TATCGGCGAAATGATCGTCGG 17100 |||| ||| || ||| | |||||||| ||| | || |||| ||||||||| || Sbjct 8802 AACACGATGGCCCAAGGCAATCCGGTGCCTCTCTTGTACGGGCG-AATGATCGTTGG 8857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170665415154230