Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 172 7e-38 >seq3 Length=15630833 Score = 172 bits (190), Expect = 7e-38 Identities = 448/677 (66%), Gaps = 12/677 (2%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || |||||||||||||| ||| || | | || |||||||| |||||||| || | | Sbjct 10143230 GGGCACATCAACGACCAATCTTGATCTTTTTCGACACGTTTCATGAAGAGATCTGGCACC 10143171 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTA 63350 || ||||| | || | || | | | ||||||| | | || || |||||| | Sbjct 10143170 CAGAGAGCCAAGAACAAGTCACGAGCAC---GTTCCTCTTCTGGTCCGGTGTTCTTTCGA 10143114 Query 63351 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63410 ||| | | ||| | | || || | |||||| || |||||||| ||||| | |||| Sbjct 10143113 AGAGCAACAAACTCGAAGATGTCGGCATGCCATGGCTCCAAGTAGATGGCGAATGCTCCT 10143054 Query 63411 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63470 || || ||||| ||||| ||||| | ||| | ||| ||||| || || || | | |||| Sbjct 10143053 GGTCGCTTGTTGCCTCCTTGATCAACGTAACGAGCAGTGTTGTTGTAGACACGAAGCATT 10142994 Query 63471 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA 63530 || || | || || ||| | || ||||| |||| || ||| | ||||| || Sbjct 10142993 GGTATGAGTCCATTGGATGTTCCGTTGGTTCCGGCAATCACTGAACCAGTTGCACGGATC 10142934 Query 63531 TTA--CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63588 || | ||||| |||| ||||| || || | || ||||| | ||||| | || | Sbjct 10142933 TTGTGCACATTGA--GACCGATTCCTCCGGCACTCTTTGAGATCAGAGCGCACTGCTTCA 10142876 Query 63589 ACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGAC 63647 | ||||| ||||| || || || ||| |||| || || |||| || |||| Sbjct 10142875 AAGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAG-CATGAAGAC 10142817 Query 63648 ATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63707 || || |||| ||||| | || || | || || ||||| || || | | Sbjct 10142816 ATCTGTGGACGGCATGTTCCAGAGTTGAAAAGAGTTGGCGAAGCATGTGTCATGTACCGC 10142757 Query 63708 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63767 || || | | |||||||||||||| || | | | || || | || ||||| | Sbjct 10142756 TCCGACATCAAGTTGTACGTCTCAATCGCCGCGGCAATGTCGTTTCCGTGGATTCCAATG 10142697 Query 63768 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAG 63827 ||||||||||| ||||| ||||| ||||| || || | || ||||| || || | | | Sbjct 10142696 GCGACACGCATCAACATCTGCTGTGGTCTCTCGACGACTTCCTTGTTGATCTTGAGAAGG 10142637 Query 63828 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63887 || || || | || || || ||||| ||| |||| || | |||| ||||| | Sbjct 10142636 TAAGAACGCTCGAGCGTCTTGAATCCAAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACG 10142577 Query 63888 ATAACCGAATTGAGCTT 63904 || | || |||||||| Sbjct 10142576 ATGGCGGAGTTGAGCTT 10142560 Score = 132 bits (146), Expect = 6e-26 Identities = 325/492 (66%), Gaps = 3/492 (1%) Strand=Plus/Minus Query 62035 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094 |||| || | ||||| |||| || | | || || || ||||| | |||||||||| Sbjct 10144708 CCTTATCGACAGTGAACTGAACGGCATTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 10144649 Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154 | || || || || |||||||||| || ||||| || | || || || | Sbjct 10144648 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGCGGCGTAGCTTG 10144589 Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214 | | || || ||||| || | ||||| |||||||||||| ||||| | || |||| Sbjct 10144588 GCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCCACGATCGGCAG 10144529 Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62274 |||| | || ||| ||| |||| || ||||| | ||| |||| | ||| || | Sbjct 10144528 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAGTTCCTTGATGT 10144469 Query 62275 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331 | ||||||| || |||| || ||||||||| | | || | | |||||| | Sbjct 10144468 CGTCTGGAATTCCTGGAATATTTTGGATGGATCCATTGTTGGCGATGAGACGATTCTTCA 10144409 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | ||||| ||| ||| |||||| | | | | || | || || || || | || Sbjct 10144408 TGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGTGTGGATTGACGATTT 10144349 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 |||| || || || | || | |||| ||| || ||| || || || || | ||| | Sbjct 10144348 GGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTAGAAGTGTATGGCTCAATCGATT 10144289 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 | || ||||| | || |||||||| || ||||| ||||| || |||| | | ||| | Sbjct 10144288 CGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATGAGGAGACTGT 10144229 Query 62512 TTCTAAGACCGT 62523 | | || ||||| Sbjct 10144228 TGCGAACACCGT 10144217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629792021532720