Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq657 125 3e-24 >seq657 Length=1792 Score = 125 bits (138), Expect = 3e-24 Identities = 132/172 (77%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 48642 AAGAAGCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATC 48701 ||||| || ||||| |||||| ||| || ||| ||||||||| || |||||||| || Sbjct 589 AAGAAACCCAACCCCATCGACGTGCATGTTGGCAGCCGCATCCGCCTTCGCCGCAATATG 648 Query 48702 ATCGGCATGAGCCAGGAGACGCTGGCTGCGCAT--CTCGGCATCACCTTCCAGCAGGTCC 48759 | || | || ||||| | | | ||| | ||||||||||| ||||||||| ||| Sbjct 649 CTGGGTCTCAGTCAGGAAAAATTAG--GCGAAAGCCTCGGCATCACTTTCCAGCAGATCC 706 Query 48760 AGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAGGCCAT 48811 ||||||||||||| ||| |||| |||||||| || ||||| || ||||| || Sbjct 707 AGAAATACGAAAAAGGCACCAATCGCGTCGGTGCAAGCAGACTTCAGGCTAT 758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183602515997364