Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 190 3e-43 >seq3 Length=15630833 Score = 190 bits (210), Expect = 3e-43 Identities = 479/722 (66%), Gaps = 12/722 (2%) Strand=Plus/Minus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 ||||| || |||||||| | || | ||| || || || || |||||||||||| Sbjct 10143275 TCGAATTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 10143216 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || ||| || | | || |||||||| |||||||| || | ||| ||||| | || Sbjct 10143215 CAATCTTGATCTTTTTCGACACGTTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAAC 10143156 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 || || | | | ||||||| | | || || |||||| |||| | | ||| | Sbjct 10143155 AAGTCACGAGCAC---GTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCG 10143099 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | || || |||||| || |||||||| ||||| | |||| || || ||||| ||| Sbjct 10143098 AAGATGTCGGCATGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGCTTGTTGCCT 10143039 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 || ||||| | ||| | ||| ||||| || || || | | |||||| || | |||||| Sbjct 10143038 CCTTGATCAACGTAACGAGCAGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTG 10142979 Query 66279 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATAT--TACTAATTGATA 66336 ||||| || ||||| |||| || ||| ||||||| || | | | |||| | Sbjct 10142978 GATGTTCCGTTGGTTCCGGCAATCACTGAACCAGTTGCACGGATCTTGTGCACATTG--A 10142921 Query 66337 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 66396 |||| ||||| || || | || ||||| | ||||| | || || || || ||||| | Sbjct 10142920 GACCGATTCCTCCGGCACTCTTTGAGATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTC 10142861 Query 66397 CCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 | || || || |||| || || || || || |||||| || |||| | Sbjct 10142860 CGAGAATCGAGTCCTCGCTCATCGTCAACAAG-AAGCATGAAGACATCTGTGGACGGCAT 10142802 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| | || || | || || ||||| || || | | || || | | ||| Sbjct 10142801 GTTCCAGAGTTGAAAAGAGTTGGCGAAGCATGTGTCATGTACCGCTCCGACATCAAGTTG 10142742 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||||||||| || | | | || || | || ||||| | ||||||||||| ||| Sbjct 10142741 TACGTCTCAATCGCCGCGGCAATGTCGTTTCCGTGGATTCCAATGGCGACACGCATCAAC 10142682 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 || ||||| ||||| || |||| | ||||| || || | | ||| || || | Sbjct 10142681 ATCTGCTGTGGTCTCTCGACGACTTCCTTGTTGATCTTGAGAAGGTAAGAACGCTCGAGC 10142622 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 66695 || || || ||||| ||| |||| || | |||| ||||| | || | |||||||| Sbjct 10142621 GTCTTGAATCCAAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACGATGGCGGAGTTGAGC 10142562 Query 66696 TT 66697 || Sbjct 10142561 TT 10142560 Score = 132 bits (146), Expect = 6e-26 Identities = 325/492 (66%), Gaps = 3/492 (1%) Strand=Plus/Minus Query 64828 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887 |||| || | ||||| |||| || | | || || || ||||| | |||||||||| Sbjct 10144708 CCTTATCGACAGTGAACTGAACGGCATTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 10144649 Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 | || || || || |||||||||| || ||||| || | || || || | Sbjct 10144648 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGCGGCGTAGCTTG 10144589 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | | || || ||||| || | ||||| |||||||||||| ||||| | || |||| Sbjct 10144588 GCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCCACGATCGGCAG 10144529 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 65067 |||| | || ||| ||| |||| || ||||| | ||| |||| | ||| || | Sbjct 10144528 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAGTTCCTTGATGT 10144469 Query 65068 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 65124 | ||||||| || |||| || ||||||||| | || || | | |||||| | Sbjct 10144468 CGTCTGGAATTCCTGGAATATTTTGGATGGATCCATTGTTGGCGATGAGACGATTCTTCA 10144409 Query 65125 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 65184 | ||||| ||| ||| |||||| | | | | || | || ||||| || | || Sbjct 10144408 TGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGTGTGGATTGACGATTT 10144349 Query 65185 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 65244 | || || || || | || | |||| ||| || ||| || || || || | || | Sbjct 10144348 GGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTAGAAGTGTATGGCTCAATCGATT 10144289 Query 65245 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 65304 | || ||||| | || |||||||| || ||||| ||||| || |||| | | ||| | Sbjct 10144288 CGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATGAGGAGACTGT 10144229 Query 65305 TTCTAAGACCGT 65316 | | || ||||| Sbjct 10144228 TGCGAACACCGT 10144217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658146069957160