Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 206 4e-48 >seq3 Length=15630833 Score = 206 bits (228), Expect = 4e-48 Identities = 480/719 (67%), Gaps = 6/719 (1%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||| || |||||||| || || | ||| || || ||| || |||||||||||| Sbjct 10143275 TCGAATTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 10143216 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || ||| ||| | | || |||||||| |||||||| || | ||| ||||| | || Sbjct 10143215 CAATCTTGATCTTTTTCGACACGTTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAAC 10143156 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 | || | | | | ||| || ||| || |||||| |||| | | ||| | | Sbjct 10143155 AAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAG 10143096 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 || || | |||||| || |||||||| ||||| | |||| ||||| ||||| ||||| Sbjct 10143095 ATGTCGGCATGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGCTTGTTGCCTCCT 10143036 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 ||||| | ||| | ||| ||||| || || || | | |||||| || | ||||||||| Sbjct 10143035 TGATCAACGTAACGAGCAGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGAT 10142976 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGAC 80218 || || ||||| |||| || ||| | ||||| || | | | |||| |||| Sbjct 10142975 GTTCCGTTGGTTCCGGCAATCACTGAACCAGTTGCACGGATCTTGTGCACATTG--AGAC 10142918 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | ||||| || || | || ||||| | ||||| | || || || || ||||| || Sbjct 10142917 CGATTCCTCCGGCACTCTTTGAGATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCGA 10142858 Query 80279 CTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || || || |||| || || || || || |||||| || |||| | ||| Sbjct 10142857 GAATCGAGTCCTCGCTCATCGTCAACAAG-AAGCATGAAGACATCTGTGGACGGCATGTT 10142799 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || | || || | || || ||||| || || | | || |||| | |||||| Sbjct 10142798 CCAGAGTTGAAAAGAGTTGGCGAAGCATGTGTCATGTACCGCTCCGACATCAAGTTGTAC 10142739 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 |||||||| || | | || || | || ||||| | ||||||||||| ||||| Sbjct 10142738 GTCTCAATCGCCGCGGCAATGTCGTTTCCGTGGATTCCAATGGCGACACGCATCAACATC 10142679 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 ||||| ||||| || |||| | || || || || | | |||||| || | || Sbjct 10142678 TGCTGTGGTCTCTCGACGACTTCCTTGTTGATCTTGAGAAGGTAAGAACGCTCGAGCGTC 10142619 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 || || ||||| ||| |||| || | |||| ||||| | || | |||||||| || Sbjct 10142618 TTGAATCCAAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACGATGGCGGAGTTGAGCTT 10142560 Score = 147 bits (162), Expect = 3e-30 Identities = 328/492 (67%), Gaps = 3/492 (1%) Strand=Plus/Minus Query 78707 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766 |||| || | ||||| |||| || | | || || || ||||| | |||||||||| Sbjct 10144708 CCTTATCGACAGTGAACTGAACGGCATTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 10144649 Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 | || || || || ||||||||||||| ||||| || | || || || | Sbjct 10144648 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGCGGCGTAGCTTG 10144589 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | | || || ||||| || | ||||| |||||||||||| ||||| | || |||| Sbjct 10144588 GCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCCACGATCGGCAG 10144529 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 78946 |||| | || ||| ||| |||| || ||||| | ||| |||| | ||| || | Sbjct 10144528 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAGTTCCTTGATGT 10144469 Query 78947 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003 | ||||||| || |||| || ||||||||| | || || | | |||||| | Sbjct 10144468 CGTCTGGAATTCCTGGAATATTTTGGATGGATCCATTGTTGGCGATGAGACGATTCTTCA 10144409 Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063 | || || ||| ||| |||||| | | | | || | || ||||| || | || Sbjct 10144408 TGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGTGTGGATTGACGATTT 10144349 Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123 | || || || || | || | |||| ||| || ||| || ||||| || | ||||| Sbjct 10144348 GGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTAGAAGTGTATGGCTCAATCGATT 10144289 Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183 | || ||||| | || |||||||| || || |||||||| || |||| | | ||| | Sbjct 10144288 CGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATGAGGAGACTGT 10144229 Query 79184 TTCTAAGACCGT 79195 | | || ||||| Sbjct 10144228 TGCGAACACCGT 10144217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718239629308360