Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 5e-13 >seq3 Length=15630833 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 13696 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13755 ||||| ||||| ||| || ||||||||||||| || || || || | ||| || || Sbjct 12047870 ATAAGCTCGTTGGAATGGGTCAATCCTGGCATCAGACCGCGCTTCTTGAGCCAGAAAATC 12047929 Query 13756 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCT 13815 | ||||| || ||| ||||| || |||||||| ||||| ||||| || || || || Sbjct 12047930 GACGCGAACGAGCCGCTGAAGAAGATGCCCTCAACGGCAGCGAACGCGATGAGCCGCTCG 12047989 Query 13816 CCAAACGATGCTTTTTTGTTTGATATCCA 13844 | |||||||| || ||| || ||||| Sbjct 12047990 GCGAACGATGCCTTGGTGTCGGAAATCCA 12048018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478569363312360