Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 6e-11 >seq3 Length=15630833 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| || || | ||||| | || || | || || ||||| || Sbjct 4184537 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCCTCAAGCTGCTTCCCGGCGAA 4184478 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||||| || ||||| | || | ||||| || || |||| ||||||| | Sbjct 4184477 GATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTT 4184418 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| || || || |||| || ||||| ||||| || ||||||||||| Sbjct 4184417 TTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTGATAGTCTTTCCAGTAAGAGTTTTCAC 4184358 Query 43098 AAAAATTTGCATT 43110 ||||| |||||| Sbjct 4184357 GAAAATCTGCATT 4184345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381354498836442